This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339958 (25 seq.)
>A171004369
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2737924
2737853
-
Thr
CGT
-
¡û
>A171004637
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2798324
2798251
-
Thr
CGT
-
¡û
>A171004679
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3359719
3359792
+
Thr
CGT
-
¡û
>A171004771
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
627157
627229
+
Thr
CGT
-
¡û
>A171004824
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
604444
604515
+
Thr
CGT
-
¡û
>A171004877
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
637876
637948
+
Thr
CGT
-
¡û
>A171005336
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2726022
2725950
-
Thr
CGT
-
¡û
>A171005446
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
621742
621670
-
Thr
CGT
-
¡û
>A171005503
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
602342
602271
-
Thr
CGT
-
¡û
>A171005525
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4349847
4349919
+
Thr
CGT
-
¡û
>A171005561
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
610941
611012
+
Thr
CGT
-
¡û
>A171005646
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2479282
2479211
-
Thr
CGT
-
¡û
>WENV180346507
OBLN01129339
[OBLN] sediment metagenome; sediment
252
180
-
Thr
CGT
[ENA]
¢þ
>WENV183702327
PDVH01041408
[PDVH] alkali sediment metagenome; glacial lake sediment
122
51
-
Thr
CGT
[ENA]
¢þ
>WENV183703600
PDVJ01026728
[PDVJ] alkali sediment metagenome; glacial lake sediment
700
772
+
Thr
CGT
[ENA]
¢þ
>WENV183703789
PDVJ01046509
[PDVJ] alkali sediment metagenome; glacial lake sediment
580
651
+
Thr
CGT
[ENA]
¢þ
>At1482
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1715295
1715224
-
Thr
CGT
[Ensembl]
¡û
>W1910569444
JJOV01000041
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
66588
66660
+
Thr
CGT
[ENA]
¡û
>W1910570742
JJPU01000178
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
8350
8421
+
Thr
CGT
[ENA]
¡û
>W1910571254
JJQF01000015
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
8369
8440
+
Thr
CGT
[ENA]
¡û
>W1910572062
JJQU01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
23861
23790
-
Thr
CGT
[ENA]
¡û
>W1910635244
LMVP01000101
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
10282
10210
-
Thr
CGT
[ENA]
¡û
>W1910655379
LZPK01000055
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
9089
9018
-
Thr
CGT
[ENA]
¡û
>W1610000031
AAAR03000013
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
15470
15542
+
Thr
CGT
[ENA]
¡û
>W1610048602
BBEF01000025
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
28460
28531
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK