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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339995 (76 seq.)
>W1710776030
LIZH01000633
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
1993
2064
+
Val
CAC
[ENA]
¡û
>W1710871826
LMLM01000033
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
37064
36990
-
Val
CAC
[ENA]
¡û
>W1710875409
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
1431339
1431265
-
Val
CAC
[ENA]
¡û
>W1710890928
LNCE01000079
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
3117
3191
+
Val
CAC
[ENA]
¡û
>W1711033479
LRHX01000012
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
154498
154424
-
Val
CAC
[ENA]
¡û
>W1711033706
LRIB01000027
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
283396
283322
-
Val
CAC
[ENA]
¡û
>W1711394889
MESN01000196
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
2023
2097
+
Val
CAC
[ENA]
¡û
>W1711394999
MESQ01000028
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
565
491
-
Val
CAC
[ENA]
¡û
>W1711751406
MUNS01000034
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
106589
106515
-
Val
CAC
[ENA]
¡û
>W1712004484
NEGX01000066
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
567
493
-
Val
CAC
[ENA]
¡û
>C171010480
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
2383934
2384008
+
Val
CAC
-
¡û
>C171091703
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
2464309
2464235
-
Val
CAC
-
¡û
>C171095019
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
3920070
3919996
-
Val
CAC
-
¡û
>W131176189
ARJV01000026
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
311897
311971
+
Val
CAC
[ENA]
¡û
>W131181083
ARNP01000139
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
22465
22391
-
Val
CAC
[ENA]
¡û
>W131181084
ARNP01000139
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
22247
22173
-
Val
CAC
[ENA]
¡û
>W131214322
ATTV01000055
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001003-K18 [ATTV]
4663
4737
+
Val
CAC
[ENA]
¡û
>WENV180026383
FTIT01022682
[FTIT] metagenome; soil
195
269
+
Val
CAC
[ENA]
¢þ
>WENV180250148
OBEQ010260043
[OBEQ] groundwater metagenome; groundwater
160
86
-
Val
CAC
[ENA]
¢þ
>WENV180308541
OBJR01036035
[OBJR] soil metagenome; soil
364
290
-
Val
CAC
[ENA]
¢þ
>WENV180594071
OCOY01026801
[OCOY] marine metagenome; ENVO:00002010
150
224
+
Val
CAC
[ENA]
¢þ
>WENV181315193
OFJN01006908
[OFJN] marine metagenome; sea ice
400
474
+
Val
CAC
[ENA]
¢þ
>WENV181364689
OFPA01001078
[OFPA] sediment metagenome; Lake sediment
283
357
+
Val
CAC
[ENA]
¢þ
>WENV181364838
OFPE01001287
[OFPE] sediment metagenome; Lake sediment
308
234
-
Val
CAC
[ENA]
¢þ
>WENV181364917
OFPG01000008
[OFPG] sediment metagenome; Lake sediment
19254
19180
-
Val
CAC
[ENA]
¢þ
>WENV181367536
OFQB01008591
[OFQB] freshwater metagenome; Freshwater Lake
184
110
-
Val
CAC
[ENA]
¢þ
>WENV181379437
OFRD01001531
[OFRD] wastewater metagenome; Exp Tend CN 100WW
7522
7596
+
Val
CAC
[ENA]
¢þ
>W141142456
AWQR01000035
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
30935
30861
-
Val
CAC
[ENA]
¡û
>W141265992
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
4146723
4146797
+
Val
CAC
[ENA]
¡û
>WENV183676824
ORJL011672984
[ORJL] groundwater metagenome; groundwater
173
247
+
Val
CAC
[ENA]
¢þ
>WENV183728117
PJTP01037981
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
225
299
+
Val
CAC
[ENA]
¢þ
>WENV170554336
CXWK01062830
[CXWK] wastewater metagenome; activated sludge
594
520
-
Val
CAC
[ENA]
¢þ
>WENV170706994
LNAP01010562
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2929
3003
+
Val
CAC
[ENA]
¢þ
>C181187784
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
1650330
1650256
-
Val
CAC
-
¡û
>C191098169
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
3300775
3300701
-
Val
CAC
-
¡û
>C191173988
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
7220214
7220288
+
Val
CAC
-
¡û
>C191174030
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
1272243
1272169
-
Val
CAC
-
¡û
>W141739213
JNNN01000007
Betaproteobacteria
Massilia sp. LC238 [JNNN]
24390
24464
+
Val
CAC
[ENA]
¡û
>W141739214
JNNN01000007
Betaproteobacteria
Massilia sp. LC238 [JNNN]
29082
29156
+
Val
CAC
[ENA]
¡û
>W141811297
JPXI01000029
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
438463
438389
-
Val
CAC
[ENA]
¡û
>W141811298
JPXI01000029
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
435403
435329
-
Val
CAC
[ENA]
¡û
>W1910700226
MESI01000018
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
29991
29917
-
Val
CAC
[ENA]
¡û
>W1910889221
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
455859
455785
-
Val
CAC
[ENA]
¡û
>W1910942568
NJGY01000002
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
631279
631205
-
Val
CAC
[ENA]
¡û
>W1911199871
NRDQ01000063
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
9531
9605
+
Val
CAC
[ENA]
¡û
>W1911618953
PPXQ01000001
Betaproteobacteria
Massilia sp. Mn16-1_5 [PPXQ]
166788
166862
+
Val
CAC
[ENA]
¡û
>SRA1001831
SRR001308.77886
Metagenomic characterization of a wastewater treatment plant (SRP000180)
82
156
+
Val
CAC
[SRA]
>W1810062426
PDOC01000005
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
84057
84131
+
Val
CAC
[ENA]
¡û
>W1810068337
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
1987583
1987509
-
Val
CAC
[ENA]
¡û
>W1810068387
PDZL01000003
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
311555
311481
-
Val
CAC
[ENA]
¡û
>W1810121335
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1178330
1178256
-
Val
CAC
[ENA]
¡û
>W1810487079
QAYI01000001
Betaproteobacteria
Massilia sp. GV016 [QAYI]
1120060
1119986
-
Val
CAC
[ENA]
¡û
>W1810570330
QEII01000318
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
106442
106516
+
Val
CAC
[ENA]
¡û
>W1810672566
QJTN01000001
Betaproteobacteria
Massilia sp. GV024 [QJTN]
1120060
1119986
-
Val
CAC
[ENA]
¡û
>W1810885085
QUNB01000005
Betaproteobacteria
Duganella sp. GV032 [QUNB]
231207
231281
+
Val
CAC
[ENA]
¡û
>W1810886075
QUNU01000004
Betaproteobacteria
Duganella sp. GV067 [QUNU]
432552
432478
-
Val
CAC
[ENA]
¡û
>W1810908099
QVIL01000004
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
453429
453503
+
Val
CAC
[ENA]
¡û
>W1810908166
QVIM01000004
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
453422
453496
+
Val
CAC
[ENA]
¡û
>W1810908392
QVIP01000004
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
199026
198952
-
Val
CAC
[ENA]
¡û
>C151092652
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
1887418
1887344
-
Val
CAC
-
¡û
>W1510720097
CXON01000003
Betaproteobacteria
Limnohabitans sp. 2KL-3 [CXON]
43548
43474
-
Val
CAC
[ENA]
¡û
>W121112475
ALKO01000015
Betaproteobacteria
Limnohabitans sp. Rim47 [ALKO]
97740
97814
+
Val
CAC
[ENA]
¡û
>W1610070501
BCTH01000079
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
6023
6097
+
Val
CAC
[ENA]
¡û
>W1610189983
FBYA01000004
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
97783
97857
+
Val
CAC
[ENA]
¡û
>W1610640136
LIZH01000633
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
1993
2064
+
Val
CAC
[ENA]
¡û
>W1610723394
LMDJ01000005
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
872
798
-
Val
CAC
[ENA]
¡û
>W1610734172
LMLM01000033
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
37064
36990
-
Val
CAC
[ENA]
¡û
>W1610737109
LMNW01000012
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
689221
689295
+
Val
CAC
[ENA]
¡û
>W1610737755
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
1431339
1431265
-
Val
CAC
[ENA]
¡û
>W1610751324
LNCE01000079
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
3117
3191
+
Val
CAC
[ENA]
¡û
>W1611056228
MAQB01000006
Betaproteobacteria
Janthinobacterium lividum [MAQB]
59899
59973
+
Val
CAC
[ENA]
¡û
>W1710067874
BCTH01000079
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
6023
6097
+
Val
CAC
[ENA]
¡û
>W1710191599
FBYA01000004
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
97783
97857
+
Val
CAC
[ENA]
¡û
>W1710509369
FMXD01000006
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
266807
266881
+
Val
CAC
[ENA]
¡û
>W1710522179
FNHA01000001
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
513829
513755
-
Val
CAC
[ENA]
¡û
>W1710720633
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
1030555
1030629
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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