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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339997 (66 seq.)
>W1710931980
LOHU01000041
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
35660
35586
-
Gln
TTG
[ENA]
¡û
>W1711621275
MPCY01000080
Alphaproteobacteria
Roseobacter sp. MedPE-SW [MPCY]
2478
2404
-
Gln
TTG
[ENA]
¡û
>W1711621290
MPCZ01000002
Alphaproteobacteria
Roseobacter sp. MedPE-SWchi [MPCZ]
324661
324735
+
Gln
TTG
[ENA]
¡û
>W1711621336
MPDA01000005
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
157
83
-
Gln
TTG
[ENA]
¡û
>W1711798613
MWVJ01000122
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
30662
30588
-
Gln
TTG
[ENA]
¡û
>C171047850
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
238542
238616
+
Gln
TTG
-
¡û
>C171092039
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2722481
2722555
+
Gln
TTG
-
¡û
>w023698
AAYC01000001
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
624125
624199
+
Gln
TTG
[ENA]
¡û
>w013096
AANB01000001
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
365105
365179
+
Gln
TTG
[ENA]
¡û
>W08005801
ABIE01000006
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
23234
23163
-
Gln
TTG
[ENA]
¡û
>W08005877
ABIF01000010
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
140216
140290
+
Gln
TTG
[ENA]
¡û
>W141151430
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
2311262
2311188
-
Gln
TTG
[ENA]
¡û
>W141151623
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
326545
326619
+
Gln
TTG
[ENA]
¡û
>WENV182585413
OJHH01018817
[OJHH] seawater metagenome; Sea water
551
477
-
Gln
TTG
[ENA]
¢þ
>WENV170014412
AYRF01040246
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
121
195
+
Gln
TTG
[ENA]
¢þ
>WENV170634424
FYBJ01001254
[FYBJ] marine metagenome; marine
80
6
-
Gln
TTG
[ENA]
¢þ
>C181008449
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
3279662
3279588
-
Gln
TTG
-
¡û
>C181008469
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
254166
254240
+
Gln
TTG
-
¡û
>C181008564
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
3176073
3175999
-
Gln
TTG
-
¡û
>C181008583
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
264133
264207
+
Gln
TTG
-
¡û
>C181008640
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
237612
237686
+
Gln
TTG
-
¡û
>C181008697
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
229625
229699
+
Gln
TTG
-
¡û
>C181008793
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
3106462
3106388
-
Gln
TTG
-
¡û
>C181008818
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
626086
626160
+
Gln
TTG
-
¡û
>C181008870
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
219444
219518
+
Gln
TTG
-
¡û
>C181008927
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
259145
259219
+
Gln
TTG
-
¡û
>C181009023
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
2923598
2923524
-
Gln
TTG
-
¡û
>C181009041
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
265810
265884
+
Gln
TTG
-
¡û
>C181009098
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
258573
258647
+
Gln
TTG
-
¡û
>C181009194
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
3313914
3313840
-
Gln
TTG
-
¡û
>C181009213
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
219456
219530
+
Gln
TTG
-
¡û
>C181009270
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
219444
219518
+
Gln
TTG
-
¡û
>C181009327
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
229625
229699
+
Gln
TTG
-
¡û
>C181009424
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
3172665
3172591
-
Gln
TTG
-
¡û
>C181009443
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
210237
210311
+
Gln
TTG
-
¡û
>C181009500
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
262533
262607
+
Gln
TTG
-
¡û
>C181009557
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
262479
262553
+
Gln
TTG
-
¡û
>C181009613
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
291672
291746
+
Gln
TTG
-
¡û
>C181009670
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
274184
274258
+
Gln
TTG
-
¡û
>C181009727
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
264133
264207
+
Gln
TTG
-
¡û
>C181009823
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
3176077
3176003
-
Gln
TTG
-
¡û
>C181009842
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
210234
210308
+
Gln
TTG
-
¡û
>C181009938
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
3278496
3278422
-
Gln
TTG
-
¡û
>C181009957
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
219444
219518
+
Gln
TTG
-
¡û
>C181048997
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
3209064
3208990
-
Gln
TTG
-
¡û
>C181049054
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
3209064
3208990
-
Gln
TTG
-
¡û
>C191083127
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
254265
254339
+
Gln
TTG
-
¡û
>C191083183
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
258503
258577
+
Gln
TTG
-
¡û
>C191083251
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2976815
2976889
+
Gln
TTG
-
¡û
>C191103766
CP033219
Alphaproteobacteria
Parasedimentitalea marina W43 [CP033219]
552928
552854
-
Gln
TTG
-
¡û
>W1910285284
FREY01000014
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
90634
90708
+
Gln
TTG
[ENA]
¡û
>C141011201
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
3279529
3279455
-
Gln
TTG
[Ensembl]
¡û
>W1910500568
FXZK01000005
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
332362
332436
+
Gln
TTG
[ENA]
¡û
>W1911539218
OMPQ01000008
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
375161
375087
-
Gln
TTG
[ENA]
¡û
>W1911539290
OMPR01000016
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
25732
25658
-
Gln
TTG
[ENA]
¡û
>W1810724973
QOCE01000013
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 [QOCE]
48277
48203
-
Gln
TTG
[ENA]
¡û
>W1511388769
JSWJ01000012
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
317367
317293
-
Gln
TTG
[ENA]
¡û
>W1511388814
JSWK01000005
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
239499
239425
-
Gln
TTG
[ENA]
¡û
>C121003772
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
258437
258511
+
Gln
TTG
[Ensembl]
¡û
>C121003830
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
254266
254340
+
Gln
TTG
-
¡û
>W1610016161
AOQA01000008
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
1319
1245
-
Gln
TTG
[ENA]
¡û
>W1610093024
CYSG01000015
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
24100
24026
-
Gln
TTG
[ENA]
¡û
>W1610630888
LIKT01000002
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
301423
301497
+
Gln
TTG
[ENA]
¡û
>W1610789449
LOHU01000041
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
35660
35586
-
Gln
TTG
[ENA]
¡û
>W1710013052
AOQA01000008
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
1319
1245
-
Gln
TTG
[ENA]
¡û
>W1710543096
FNZQ01000004
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
261038
260964
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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