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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340256 (13 seq.)
>W1711766199
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
1244596
1244520
-
Ile
GAT
[ENA]
¡û
>W1711766202
MUYE01000001
Alphaproteobacteria
Bartonella sp. AR 15-3 [MUYE]
1217923
1217847
-
Ile
GAT
[ENA]
¡û
>C171099694
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
1171841
1171765
-
Ile
GAT
-
¡û
>C171099697
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
1141042
1140966
-
Ile
GAT
-
¡û
>C171099776
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
1245585
1245509
-
Ile
GAT
-
¡û
>C171099781
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
1194046
1193970
-
Ile
GAT
-
¡û
>W141010027
AHPK01000017
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
2359
2435
+
Ile
GAT
[ENA]
¡û
>W141010039
AHPK01000019
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
2359
2435
+
Ile
GAT
[ENA]
¡û
>C181037927
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
1228041
1227965
-
Ile
GAT
-
¡û
>C181037930
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
1202144
1202068
-
Ile
GAT
-
¡û
>ENV000362
AF415211
Environmental sample from ENV division of INSDC
108
184
+
Ile
GAT
[ENA]
>ENV003927
DQ155376
Environmental sample from ENV division of INSDC
57
133
+
Ile
GAT
[ENA]
>ENV003943
DQ155386
Environmental sample from ENV division of INSDC
57
133
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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