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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340334 (67 seq.)
>W1711092544
LTEE01000051
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
15196
15124
-
Val
TAC
[ENA]
¡û
>W1711093837
LTFJ01000007
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
295526
295598
+
Val
TAC
[ENA]
¡û
>W1711095103
LTGN01000017
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
125703
125631
-
Val
TAC
[ENA]
¡û
>W1711096238
LTHP01000014
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
3457
3385
-
Val
TAC
[ENA]
¡û
>W1711096318
LTHQ01000032
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
261831
261759
-
Val
TAC
[ENA]
¡û
>W1711096977
LTIG01000022
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
51503
51431
-
Val
TAC
[ENA]
¡û
>W1711097552
LTIU01000029
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
25778
25850
+
Val
TAC
[ENA]
¡û
>W1711098051
LTJF01000030
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
203595
203523
-
Val
TAC
[ENA]
¡û
>W1711098543
LTJR01000002
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
28844
28772
-
Val
TAC
[ENA]
¡û
>W1711099082
LTKD01000047
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
25983
26055
+
Val
TAC
[ENA]
¡û
>W1711099333
LTKK01000017
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
41026
40954
-
Val
TAC
[ENA]
¡û
>W1711102275
LTNP01000015
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
125638
125566
-
Val
TAC
[ENA]
¡û
>W1711102330
LTNQ01000031
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
41053
40981
-
Val
TAC
[ENA]
¡û
>W1711102364
LTNR01000032
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
37981
37909
-
Val
TAC
[ENA]
¡û
>W1711102422
LTNS01000025
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
25989
26061
+
Val
TAC
[ENA]
¡û
>W1711102467
LTNT01000009
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
249760
249688
-
Val
TAC
[ENA]
¡û
>W1711102530
LTNU01000049
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
52293
52221
-
Val
TAC
[ENA]
¡û
>W1711102602
LTNV01000064
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
50471
50399
-
Val
TAC
[ENA]
¡û
>W1711103256
LTOO01000004
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
49692
49620
-
Val
TAC
[ENA]
¡û
>W1711103453
LTOS01000032
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
51865
51793
-
Val
TAC
[ENA]
¡û
>W1711106983
LTSJ01000004
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
58028
57956
-
Val
TAC
[ENA]
¡û
>W1711110038
LTVE01000004
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
51404
51332
-
Val
TAC
[ENA]
¡û
>W1711112789
LTXS01000022
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
140597
140669
+
Val
TAC
[ENA]
¡û
>W1711113405
LTYH01000002
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
298033
298105
+
Val
TAC
[ENA]
¡û
>W1711114784
LTZP01000029
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
54610
54682
+
Val
TAC
[ENA]
¡û
>W1711114834
LTZQ01000011
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
33921
33993
+
Val
TAC
[ENA]
¡û
>W1711114941
LTZS01000028
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
52261
52189
-
Val
TAC
[ENA]
¡û
>W1711186804
LWON01000005
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
51618
51546
-
Val
TAC
[ENA]
¡û
>W1711187878
LWPW01000021
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
25680
25608
-
Val
TAC
[ENA]
¡û
>W131219754
ATYV01000001
Actinomycetota
Corynebacterium sputi DSM 45148 [ATYV]
171158
171232
+
Val
TAC
[ENA]
¡û
>W1711427604
MIFV01000012
Actinomycetota
Corynebacterium amycolatum [MIFV]
213959
213887
-
Val
TAC
[ENA]
¡û
>W1711507511
MKXS01000015
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
58262
58190
-
Val
TAC
[ENA]
¡û
>W1711724006
MTPT01000008
Actinomycetota
Corynebacterium amycolatum [MTPT]
56470
56398
-
Val
TAC
[ENA]
¡û
>W131000481
AGEM01000013
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
259252
259180
-
Val
TAC
[ENA]
¡û
>WENV180554224
OCJN01000009
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
58226
58154
-
Val
TAC
[ENA]
¢þ
>WENV181326375
OFLL01000179
[OFLL] metagenome; faeces
20695
20767
+
Val
TAC
[ENA]
¢þ
>WENV182629051
OJKR01002288
[OJKR] metagenome; surface
2690
2762
+
Val
TAC
[ENA]
¢þ
>WENV182636138
OJKZ01000477
[OJKZ] metagenome; surface
5775
5847
+
Val
TAC
[ENA]
¢þ
>WENV182640305
OJLB01002215
[OJLB] metagenome; surface
3062
2990
-
Val
TAC
[ENA]
¢þ
>WENV182643542
OJLW01000039
[OJLW] metagenome; surface
25944
26016
+
Val
TAC
[ENA]
¢þ
>WENV182644641
OJLY01000103
[OJLY] metagenome; surface
40696
40624
-
Val
TAC
[ENA]
¢þ
>WENV182645751
OJLZ01001791
[OJLZ] metagenome; surface
1700
1628
-
Val
TAC
[ENA]
¢þ
>WENV182646302
OJMA01001264
[OJMA] metagenome; surface
1446
1518
+
Val
TAC
[ENA]
¢þ
>WENV182815159
OJYO01006434
[OJYO] human gut metagenome; human gut
554
626
+
Val
TAC
[ENA]
¢þ
>WENV182837607
OKGJ01001269
[OKGJ] human gut metagenome; human gut
665
737
+
Val
TAC
[ENA]
¢þ
>WENV170690611
LFRM01351764
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
614
686
+
Val
TAC
[ENA]
¢þ
>WENV170716665
LSQX01007162
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5573
5501
-
Val
TAC
[ENA]
¢þ
>W09114645
ABZU01000009
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
54331
54259
-
Val
TAC
[ENA]
¡û
>C181056569
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1020655
1020583
-
Val
TAC
-
¡û
>C191094579
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
172468
172540
+
Val
TAC
-
¡û
>C191111914
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
1776982
1776910
-
Val
TAC
-
¡û
>W1911596508
PNHF01000012
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
67046
66974
-
Val
TAC
[ENA]
¡û
>W1810187588
PKHS01000001
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
228681
228753
+
Val
TAC
[ENA]
¡û
>W1810187653
PKHT01000004
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
151755
151827
+
Val
TAC
[ENA]
¡û
>C151013254
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
1880437
1880365
-
Val
TAC
-
¡û
>C151039895
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
451585
451513
-
Val
TAC
[Ensembl]
¡û
>W1511351345
JRNE01000008
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
11123
11051
-
Val
TAC
[ENA]
¡û
>W1511442772
JUSD01000031
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
51285
51213
-
Val
TAC
[ENA]
¡û
>W1511457781
JVIP01000001
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
188072
188144
+
Val
TAC
[ENA]
¡û
>W1511461062
JVMD01000015
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
467029
467101
+
Val
TAC
[ENA]
¡û
>W1511463587
JVOW01000006
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
25155
25227
+
Val
TAC
[ENA]
¡û
>W1511464299
JVPT01000030
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
51582
51510
-
Val
TAC
[ENA]
¡û
>W1511469465
JVVM01000020
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
52043
51971
-
Val
TAC
[ENA]
¡û
>W1511476425
JWEP01000031
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
66935
66863
-
Val
TAC
[ENA]
¡û
>W1511585617
LAYS01000018
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
1004
932
-
Val
TAC
[ENA]
¡û
>W1610068182
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
391650
391722
+
Val
TAC
[ENA]
¡û
>W1710065555
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
391650
391722
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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