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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340336 (74 seq.)
>W1711092514
LTEE01000002
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
167
93
-
Asn
GTT
[ENA]
¡û
>W1711093836
LTFJ01000007
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
260518
260592
+
Asn
GTT
[ENA]
¡û
>W1711095102
LTGN01000017
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
155996
155922
-
Asn
GTT
[ENA]
¡û
>W1711096236
LTHP01000003
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
305
231
-
Asn
GTT
[ENA]
¡û
>W1711096314
LTHQ01000029
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
132875
132949
+
Asn
GTT
[ENA]
¡û
>W1711097003
LTIG01000046
Actinomycetota
Corynebacterium sp. HMSC077G01 [LTIG]
11102
11176
+
Asn
GTT
[ENA]
¡û
>W1711097548
LTIU01000027
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
129124
129198
+
Asn
GTT
[ENA]
¡û
>W1711098050
LTJF01000030
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
232965
232891
-
Asn
GTT
[ENA]
¡û
>W1711098542
LTJR01000002
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
55076
55002
-
Asn
GTT
[ENA]
¡û
>W1711099040
LTKD01000011
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
175
101
-
Asn
GTT
[ENA]
¡û
>W1711099334
LTKK01000020
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
233
159
-
Asn
GTT
[ENA]
¡û
>W1711102253
LTNP01000007
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
154017
154091
+
Asn
GTT
[ENA]
¡û
>W1711102326
LTNQ01000024
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
118681
118755
+
Asn
GTT
[ENA]
¡û
>W1711102393
LTNR01000071
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
11177
11251
+
Asn
GTT
[ENA]
¡û
>W1711102443
LTNS01000047
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
190
116
-
Asn
GTT
[ENA]
¡û
>W1711102468
LTNT01000010
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
1054
980
-
Asn
GTT
[ENA]
¡û
>W1711102549
LTNU01000067
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
92586
92660
+
Asn
GTT
[ENA]
¡û
>W1711102567
LTNV01000020
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
184
110
-
Asn
GTT
[ENA]
¡û
>W1711103255
LTOO01000004
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
70035
69961
-
Asn
GTT
[ENA]
¡û
>W1711103435
LTOS01000017
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
11033
10959
-
Asn
GTT
[ENA]
¡û
>W1711107011
LTSJ01000026
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
86395
86469
+
Asn
GTT
[ENA]
¡û
>W1711110033
LTVE01000001
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
179
105
-
Asn
GTT
[ENA]
¡û
>W1711112788
LTXS01000022
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
114468
114542
+
Asn
GTT
[ENA]
¡û
>W1711113404
LTYH01000002
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
262698
262772
+
Asn
GTT
[ENA]
¡û
>W1711114782
LTZP01000029
Actinomycetota
Corynebacterium sp. HMSC11E11 [LTZP]
33757
33831
+
Asn
GTT
[ENA]
¡û
>W1711114833
LTZQ01000011
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
6598
6672
+
Asn
GTT
[ENA]
¡û
>W1711114940
LTZS01000028
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
85582
85508
-
Asn
GTT
[ENA]
¡û
>W1711186805
LWON01000006
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
297
223
-
Asn
GTT
[ENA]
¡û
>W1711187879
LWPW01000024
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
198
124
-
Asn
GTT
[ENA]
¡û
>W1711427603
MIFV01000012
Actinomycetota
Corynebacterium amycolatum [MIFV]
241487
241413
-
Asn
GTT
[ENA]
¡û
>W1711492388
MKKI01000042
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
203899
203827
-
Asn
GTT
[ENA]
¡û
>W1711507510
MKXS01000015
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
84385
84311
-
Asn
GTT
[ENA]
¡û
>W1711724007
MTPT01000010
Actinomycetota
Corynebacterium amycolatum [MTPT]
423
349
-
Asn
GTT
[ENA]
¡û
>W131000480
AGEM01000013
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
285368
285294
-
Asn
GTT
[ENA]
¡û
>WENV180554223
OCJN01000009
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
84349
84277
-
Asn
GTT
[ENA]
¢þ
>WENV181326403
OFLL01000306
[OFLL] metagenome; faeces
8657
8585
-
Asn
GTT
[ENA]
¢þ
>WENV182636364
OJKZ01004653
[OJKZ] metagenome; surface
207
135
-
Asn
GTT
[ENA]
¢þ
>WENV182640461
OJLB01013682
[OJLB] metagenome; surface
610
682
+
Asn
GTT
[ENA]
¢þ
>WENV182643547
OJLW01000046
[OJLW] metagenome; surface
63697
63769
+
Asn
GTT
[ENA]
¢þ
>WENV182644657
OJLY01000124
[OJLY] metagenome; surface
61678
61750
+
Asn
GTT
[ENA]
¢þ
>WENV182645960
OJLZ01013977
[OJLZ] metagenome; surface
1133
1205
+
Asn
GTT
[ENA]
¢þ
>WENV182646448
OJMA01052272
[OJMA] metagenome; surface
428
500
+
Asn
GTT
[ENA]
¢þ
>WENV182671986
OJNM01041556
[OJNM] metagenome; surface
989
1061
+
Asn
GTT
[ENA]
¢þ
>WENV182837599
OKGJ01001010
[OKGJ] human gut metagenome; human gut
2048
2120
+
Asn
GTT
[ENA]
¢þ
>WENV170687603
LFRM01200833
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
6198
6272
+
Asn
GTT
[ENA]
¢þ
>C181056568
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
1048180
1048108
-
Asn
GTT
-
¡û
>C191079620
CP031746
Actinomycetota
Auritidibacter sp. NML130574 [CP031746]
1231144
1231072
-
Asn
GTT
-
¡û
>C191094577
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
150353
150426
+
Asn
GTT
-
¡û
>C191111913
CP033784
Actinomycetota
Corynebacterium jeikeium FDAARGOS_574 [CP033784]
1807297
1807225
-
Asn
GTT
-
¡û
>W09114644
ABZU01000009
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
74469
74395
-
Asn
GTT
[ENA]
¡û
>W1911596526
PNHF01000044
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
11495
11567
+
Asn
GTT
[ENA]
¡û
>W1810118389
PHQP01000035
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
22178
22250
+
Asn
GTT
[ENA]
¡û
>W1810187587
PKHS01000001
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
195467
195539
+
Asn
GTT
[ENA]
¡û
>W1810187652
PKHT01000004
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
121455
121527
+
Asn
GTT
[ENA]
¡û
>W1810623585
QHCV01000049
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
17546
17618
+
Asn
GTT
[ENA]
¡û
>W1810626781
QHLM01000005
Actinomycetota
Auritidibacter sp. NML130574 [QHLM]
6778
6706
-
Asn
GTT
[ENA]
¡û
>W1810626825
QHLN01000023
Actinomycetota
Auritidibacter sp. NML120779 [QHLN]
23010
23082
+
Asn
GTT
[ENA]
¡û
>W1810626886
QHLO01000016
Actinomycetota
Auritidibacter sp. NML120636 [QHLO]
19488
19560
+
Asn
GTT
[ENA]
¡û
>W1810626901
QHLP01000004
Actinomycetota
Auritidibacter sp. NML100628 [QHLP]
50842
50770
-
Asn
GTT
[ENA]
¡û
>C151013253
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
1906474
1906400
-
Asn
GTT
-
¡û
>C151013307
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
2177378
2177306
-
Asn
GTT
[Ensembl]
¡û
>C151039894
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
478910
478836
-
Asn
GTT
[Ensembl]
¡û
>W1511351361
JRNE01000045
Actinomycetota
Corynebacterium freneyi DNF00450 [JRNE]
16790
16864
+
Asn
GTT
[ENA]
¡û
>W1511442768
JUSD01000023
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
68431
68505
+
Asn
GTT
[ENA]
¡û
>W1511457780
JVIP01000001
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
157764
157838
+
Asn
GTT
[ENA]
¡û
>W1511459389
JVKJ01000001
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
257051
256979
-
Asn
GTT
[ENA]
¡û
>W1511461060
JVMD01000015
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
415004
415078
+
Asn
GTT
[ENA]
¡û
>W1511463592
JVOW01000009
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
60680
60754
+
Asn
GTT
[ENA]
¡û
>W1511464300
JVPT01000032
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
1425
1351
-
Asn
GTT
[ENA]
¡û
>W1511469464
JVVM01000020
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
76614
76540
-
Asn
GTT
[ENA]
¡û
>W1511476424
JWEP01000031
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
99116
99042
-
Asn
GTT
[ENA]
¡û
>W1511585632
LAYS01000034
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
9074
9000
-
Asn
GTT
[ENA]
¡û
>W1610068180
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
371282
371356
+
Asn
GTT
[ENA]
¡û
>W1710065553
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
371282
371356
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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