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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341644 (29 seq.)
>W131164853
ARBC01000092
Gammaproteobacteria
Lamprocystis purpurea DSM 4197 [ARBC]
13011
12936
-
Glu
TTC
[ENA]
¡û
>W1711767830
MVAR01000015
Gammaproteobacteria
Thioalkalivibrio versutus [MVAR]
148514
148589
+
Glu
TTC
[ENA]
¡û
>W131156050
AQPB01000058
Gammaproteobacteria
Thioalkalivibrio sp. ALE6 [AQPB]
99837
99912
+
Glu
TTC
[ENA]
¡û
>W131161727
AQXY01000029
Gammaproteobacteria
Thioalkalivibrio sp. ALE14 [AQXY]
82117
82042
-
Glu
TTC
[ENA]
¡û
>W131161972
AQYE01000008
Gammaproteobacteria
Thioalkalivibrio sp. ALJ9 [AQYE]
520550
520625
+
Glu
TTC
[ENA]
¡û
>W131163154
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
317670
317745
+
Glu
TTC
[ENA]
¡û
>W131173760
ARHX01000010
Gammaproteobacteria
Thioalkalivibrio sp. ALJ4 [ARHX]
414455
414530
+
Glu
TTC
[ENA]
¡û
>W131173806
ARHY01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALJ5 [ARHY]
87047
86972
-
Glu
TTC
[ENA]
¡û
>W131173841
ARHZ01000012
Gammaproteobacteria
Thioalkalivibrio sp. ARh3 [ARHZ]
279547
279622
+
Glu
TTC
[ENA]
¡û
>W131174050
ARIE01000007
Gammaproteobacteria
Thioalkalivibrio sp. ALJ6 [ARIE]
71408
71483
+
Glu
TTC
[ENA]
¡û
>W131175448
ARJG01000030
Gammaproteobacteria
Thioalkalivibrio sp. AKL12 [ARJG]
172085
172160
+
Glu
TTC
[ENA]
¡û
>W131176376
ARJZ01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALgr1 [ARJZ]
311916
311841
-
Glu
TTC
[ENA]
¡û
>W131177159
ARKP01000001
Gammaproteobacteria
Thioalkalivibrio sp. ALJ21 [ARKP]
199770
199845
+
Glu
TTC
[ENA]
¡û
>W131178142
ARLI01000048
Gammaproteobacteria
Thioalkalivibrio sp. ALMg2 [ARLI]
32567
32492
-
Glu
TTC
[ENA]
¡û
>W131178381
ARLN01000009
Gammaproteobacteria
Thioalkalivibrio sp. ALD1 [ARLN]
93232
93307
+
Glu
TTC
[ENA]
¡û
>W131178554
ARLQ01000038
Gammaproteobacteria
Thioalkalivibrio sp. ALE16 [ARLQ]
72112
72187
+
Glu
TTC
[ENA]
¡û
>W131178924
ARLY01000019
Gammaproteobacteria
Thioalkalivibrio sp. ALgr5 [ARLY]
97852
97777
-
Glu
TTC
[ENA]
¡û
>W131179739
ARMQ01000008
Gammaproteobacteria
Thioalkalivibrio sp. AKL10 [ARMQ]
95221
95146
-
Glu
TTC
[ENA]
¡û
>W131182488
ARQK01000052
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh2 [ARQK]
73960
74035
+
Glu
TTC
[ENA]
¡û
>W131185597
ARTU01000011
Gammaproteobacteria
Thioalkalivibrio sp. ALJ15 [ARTU]
230394
230319
-
Glu
TTC
[ENA]
¡û
>WENV170621447
FUWD013059546
[FUWD] metagenome; unknown
1299
1224
-
Glu
TTC
[ENA]
¢þ
>WENV170629630
FUWD013275802
[FUWD] metagenome; unknown
1299
1224
-
Glu
TTC
[ENA]
¢þ
>C181044125
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
4677646
4677721
+
Glu
TTC
-
¡û
>C151016165
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
1596135
1596210
+
Glu
TTC
[Ensembl]
¡û
>C10113295
CP001905
Gammaproteobacteria
Thioalkalivibrio sp. K90mix [CP001905]
871899
871974
+
Glu
TTC
[Ensembl]
¡û
>W11178580
AGFB01000002
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
484319
484244
-
Glu
TTC
[ENA]
¡û
>C161005789
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
2310293
2310218
-
Glu
TTC
-
¡û
>C161038455
CP011994
Gammaproteobacteria
Ectothiorhodospira sp. BSL-9 [CP011994]
27218
27143
-
Glu
TTC
[Ensembl]
¡û
>W1710550789
FOFO01000017
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
15934
16009
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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