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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341644 (18 seq.)
>WENV181242356
OFFG01000099
[OFFG] mouse gut metagenome; faeces
55936
56009
+
Trp
CCA
[ENA]
¡û
>WENV181243634
OFFH01000340
[OFFH] mouse gut metagenome; faeces
3798
3871
+
Trp
CCA
[ENA]
¡û
>WENV181244967
OFFI01005412
[OFFI] mouse gut metagenome; faeces
2830
2757
-
Trp
CCA
[ENA]
¡û
>WENV181246132
OFFJ01009890
[OFFJ] mouse gut metagenome; faeces
2855
2782
-
Trp
CCA
[ENA]
¡û
>WENV181252984
OFFQ01000462
[OFFQ] mouse gut metagenome; faeces
1607
1680
+
Trp
CCA
[ENA]
¡û
>WENV181254204
OFFR01001333
[OFFR] mouse gut metagenome; faeces
41
114
+
Trp
CCA
[ENA]
¡û
>WENV181258748
OFFV01002252
[OFFV] mouse gut metagenome; faeces
8234
8161
-
Trp
CCA
[ENA]
¡û
>WENV181261268
OFFX01014970
[OFFX] mouse gut metagenome; faeces
1033
960
-
Trp
CCA
[ENA]
¡û
>WENV181262578
OFFY01010069
[OFFY] mouse gut metagenome; faeces
810
883
+
Trp
CCA
[ENA]
¡û
>WENV181268380
OFGD01005942
[OFGD] mouse gut metagenome; faeces
2830
2757
-
Trp
CCA
[ENA]
¡û
>WENV181273518
OFGH01002825
[OFGH] mouse gut metagenome; faeces
2615
2688
+
Trp
CCA
[ENA]
¡û
>WENV181280564
OFGO01000610
[OFGO] mouse gut metagenome; faeces
30366
30293
-
Trp
CCA
[ENA]
¡û
>WENV181281617
OFGP01000176
[OFGP] mouse gut metagenome; faeces
37750
37823
+
Trp
CCA
[ENA]
¡û
>WENV181283669
OFGQ01012485
[OFGQ] mouse gut metagenome; faeces
1955
2028
+
Trp
CCA
[ENA]
¡û
>WENV181290224
OFHA01014677
[OFHA] mouse gut metagenome; faeces
2588
2515
-
Trp
CCA
[ENA]
¡û
>WENV181290737
OFHB01000100
[OFHB] mouse gut metagenome; faeces
31819
31746
-
Trp
CCA
[ENA]
¡û
>WENV181300684
OFHN01004063
[OFHN] mouse gut metagenome; faeces
5561
5488
-
Trp
CCA
[ENA]
¡û
>WENV181302905
OFHP01000294
[OFHP] mouse gut metagenome; faeces
2557
2630
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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