This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341849 (92 seq.)
>W131108936
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175031
174957
-
Glu
TTC
[ENA]
¡û
>W131108953
APGP01000063
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
25325
25251
-
Glu
TTC
[ENA]
¡û
>W131218317
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4308
4234
-
Glu
TTC
[ENA]
¡û
>W131218321
ATXO01000016
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
40200
40126
-
Glu
TTC
[ENA]
¡û
>C006911
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2742649
2742575
-
Glu
TTC
[Ensembl]
¡û
>C006923
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2323939
2323865
-
Glu
TTC
[Ensembl]
¡û
>WENV180014209
FPIC01097535
[FPIC] soil metagenome; Soil
75
1
-
Glu
TTC
[ENA]
¢þ
>WENV181226050
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
408
482
+
Glu
TTC
[ENA]
¢þ
>WENV181226159
OFDK01000118
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
15817
15743
-
Glu
TTC
[ENA]
¢þ
>WENV181285392
OFGS01000101
[OFGS] hot springs metagenome; Water and soil
18457
18383
-
Glu
TTC
[ENA]
¢þ
>WENV181285460
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
4082
4156
+
Glu
TTC
[ENA]
¢þ
>WENV181408657
OGCH01007714
[OGCH] hot springs metagenome; hot springs
1611
1685
+
Glu
TTC
[ENA]
¢þ
>WENV170562913
CZCB01007222
[CZCB] anaerobic digester metagenome; anaerobic digester
11678
11604
-
Glu
TTC
[ENA]
¢þ
>WENV170684220
LFRM01027108
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12103
12029
-
Glu
TTC
[ENA]
¢þ
>C191131109
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1091528
1091602
+
Glu
TTC
-
¡û
>C191131116
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2849775
2849701
-
Glu
TTC
-
¡û
>W09104559
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
260
186
-
Glu
TTC
[ENA]
¡û
>W09104561
AALW01000066
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
819
745
-
Glu
TTC
[ENA]
¡û
>W09113804
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233845
233919
+
Glu
TTC
[ENA]
¡û
>W09113827
ABYZ01000009
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
71481
71555
+
Glu
TTC
[ENA]
¡û
>C09100819
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
66250
66324
+
Glu
TTC
[Ensembl]
¡û
>C09100859
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603417
1603343
-
Glu
TTC
[Ensembl]
¡û
>W1911155322
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
242384
242458
+
Glu
TTC
[ENA]
¡û
>W1911155364
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1783793
1783719
-
Glu
TTC
[ENA]
¡û
>W1911244048
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1324424
1324350
-
Glu
TTC
[ENA]
¡û
>W1911244056
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941248
941174
-
Glu
TTC
[ENA]
¡û
>W1911244079
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2699520
2699594
+
Glu
TTC
[ENA]
¡û
>W1911244104
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1320735
1320661
-
Glu
TTC
[ENA]
¡û
>W1911244110
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
341507
341581
+
Glu
TTC
[ENA]
¡û
>W1911244145
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1873700
1873626
-
Glu
TTC
[ENA]
¡û
>W1911244181
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217442
1217516
+
Glu
TTC
[ENA]
¡û
>W1911244187
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
2763727
2763653
-
Glu
TTC
[ENA]
¡û
>W1911244206
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
243219
243293
+
Glu
TTC
[ENA]
¡û
>W1911244214
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
626396
626470
+
Glu
TTC
[ENA]
¡û
>W1911572544
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155618
1155692
+
Glu
TTC
[ENA]
¡û
>W1911572550
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
2701899
2701825
-
Glu
TTC
[ENA]
¡û
>W1911572574
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1037124
1037198
+
Glu
TTC
[ENA]
¡û
>W1911572598
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580075
2580001
-
Glu
TTC
[ENA]
¡û
>W1911572639
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258603
1258677
+
Glu
TTC
[ENA]
¡û
>W1911572645
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2790510
2790436
-
Glu
TTC
[ENA]
¡û
>W1810052249
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712651
712725
+
Glu
TTC
[ENA]
¡û
>W1810052264
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2244832
2244758
-
Glu
TTC
[ENA]
¡û
>W1810071897
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201710
1201784
+
Glu
TTC
[ENA]
¡û
>W1810071903
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
2744624
2744550
-
Glu
TTC
[ENA]
¡û
>W1810071946
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219453
2219527
+
Glu
TTC
[ENA]
¡û
>W1810071959
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
858521
858447
-
Glu
TTC
[ENA]
¡û
>W1810071975
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
963285
963359
+
Glu
TTC
[ENA]
¡û
>W1810072000
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506133
2506059
-
Glu
TTC
[ENA]
¡û
>W1810367995
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
826263
826337
+
Glu
TTC
[ENA]
¡û
>W1810368025
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369172
2369098
-
Glu
TTC
[ENA]
¡û
>C10103622
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
49180
49254
+
Glu
TTC
[Ensembl]
¡û
>C10103644
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1155424
1155498
+
Glu
TTC
[Ensembl]
¡û
>C11105191
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
31288
31362
+
Glu
TTC
[Ensembl]
¡û
>C11105214
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1250199
1250273
+
Glu
TTC
[Ensembl]
¡û
>C11105386
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2587223
2587149
-
Glu
TTC
[Ensembl]
¡û
>C11105406
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1594986
1594912
-
Glu
TTC
[Ensembl]
¡û
>C11105416
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
60572
60646
+
Glu
TTC
[Ensembl]
¡û
>C11105439
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368509
1368583
+
Glu
TTC
[Ensembl]
¡û
>C11105476
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2489163
2489089
-
Glu
TTC
[Ensembl]
¡û
>C11105500
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
989001
988927
-
Glu
TTC
[Ensembl]
¡û
>C11105841
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
25779
25853
+
Glu
TTC
[Ensembl]
¡û
>C11105881
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381108
1381034
-
Glu
TTC
[Ensembl]
¡û
>W11139373
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118247
118173
-
Glu
TTC
[ENA]
¡û
>W11139380
AEKB01000004
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
18666
18592
-
Glu
TTC
[ENA]
¡û
>W11139423
AEKC01000014
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
25727
25801
+
Glu
TTC
[ENA]
¡û
>W11139443
AEKC01000047
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
8894
8968
+
Glu
TTC
[ENA]
¡û
>W11139473
AEKD01000020
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
28394
28468
+
Glu
TTC
[ENA]
¡û
>W11139493
AEKD01000073
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
2494
2568
+
Glu
TTC
[ENA]
¡û
>W1511563939
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
279797
279871
+
Glu
TTC
[ENA]
¡û
>W1511563974
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1771894
1771820
-
Glu
TTC
[ENA]
¡û
>W1511564010
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
488404
488330
-
Glu
TTC
[ENA]
¡û
>W1511564028
LACN01000012
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
175463
175537
+
Glu
TTC
[ENA]
¡û
>W1511564035
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
354613
354687
+
Glu
TTC
[ENA]
¡û
>W1511564055
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192760
1192834
+
Glu
TTC
[ENA]
¡û
>W1610605879
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12103
12029
-
Glu
TTC
[ENA]
¡û
>W1710603747
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1700316
1700390
+
Glu
TTC
[ENA]
¡û
>W1710603770
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
316147
316073
-
Glu
TTC
[ENA]
¡û
>W1710603812
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2141136
2141210
+
Glu
TTC
[ENA]
¡û
>W1710603845
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
756964
756890
-
Glu
TTC
[ENA]
¡û
>W1710603890
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
162357
162431
+
Glu
TTC
[ENA]
¡û
>W1710603932
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1703800
1703726
-
Glu
TTC
[ENA]
¡û
>W1710605070
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
2149292
2149366
+
Glu
TTC
[ENA]
¡û
>W1710605095
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
768923
768849
-
Glu
TTC
[ENA]
¡û
>W1710609669
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618959
1619033
+
Glu
TTC
[ENA]
¡û
>W1710609692
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
240514
240440
-
Glu
TTC
[ENA]
¡û
>W1710609707
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1020110
1020184
+
Glu
TTC
[ENA]
¡û
>W1710609721
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2552410
2552336
-
Glu
TTC
[ENA]
¡û
>W1710609742
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
337987
338061
+
Glu
TTC
[ENA]
¡û
>W1710609776
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875355
1875281
-
Glu
TTC
[ENA]
¡û
>W1710609787
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
330731
330805
+
Glu
TTC
[ENA]
¡û
>W1710609822
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1867897
1867823
-
Glu
TTC
[ENA]
¡û
>W1710727166
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12103
12029
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK