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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342175 (63 seq.)
>W1711091117
LTBC01000020
Bacillota
Moorella mulderi DSM 14980 [LTBC]
16737
16663
-
Asn
GTT
[ENA]
¡û
>W1711091119
LTBC01000035
Bacillota
Moorella mulderi DSM 14980 [LTBC]
145
71
-
Asn
GTT
[ENA]
¡û
>W1711352289
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
234950
235024
+
Asn
GTT
[ENA]
¡û
>W1711352294
MDDB01000012
Bacillota
Moorella thermoacetica [MDDB]
22307
22233
-
Asn
GTT
[ENA]
¡û
>W1711352295
MDDB01000022
Bacillota
Moorella thermoacetica [MDDB]
121
47
-
Asn
GTT
[ENA]
¡û
>W1711352296
MDDB01000025
Bacillota
Moorella thermoacetica [MDDB]
7
81
+
Asn
GTT
[ENA]
¡û
>W1711352304
MDDC01000001
Bacillota
Moorella thermoacetica [MDDC]
200277
200351
+
Asn
GTT
[ENA]
¡û
>W1711352345
MDDC01000039
Bacillota
Moorella thermoacetica [MDDC]
211
137
-
Asn
GTT
[ENA]
¡û
>W1711352384
MDDD01000008
Bacillota
Moorella thermoacetica [MDDD]
46281
46207
-
Asn
GTT
[ENA]
¡û
>W1711352394
MDDD01000015
Bacillota
Moorella thermoacetica [MDDD]
27953
27879
-
Asn
GTT
[ENA]
¡û
>W1711352397
MDDD01000021
Bacillota
Moorella thermoacetica [MDDD]
75
1
-
Asn
GTT
[ENA]
¡û
>W1711352398
MDDD01000022
Bacillota
Moorella thermoacetica [MDDD]
2206
2132
-
Asn
GTT
[ENA]
¡û
>W1711352423
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
26814
26740
-
Asn
GTT
[ENA]
¡û
>W1711352426
MDDE01000002
Bacillota
Moorella thermoacetica [MDDE]
19378
19304
-
Asn
GTT
[ENA]
¡û
>W1711352444
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
2958
2884
-
Asn
GTT
[ENA]
¡û
>W1711428557
MIHH01000014
Bacillota
Moorella thermoacetica [MIHH]
15382
15308
-
Asn
GTT
[ENA]
¡û
>W1711428559
MIHH01000016
Bacillota
Moorella thermoacetica [MIHH]
53
127
+
Asn
GTT
[ENA]
¡û
>W1711428562
MIHH01000047
Bacillota
Moorella thermoacetica [MIHH]
75
1
-
Asn
GTT
[ENA]
¡û
>W1711428563
MIHH01000054
Bacillota
Moorella thermoacetica [MIHH]
2202
2128
-
Asn
GTT
[ENA]
¡û
>W1711428612
MIIF01000022
Bacillota
Moorella thermoacetica [MIIF]
16493
16567
+
Asn
GTT
[ENA]
¡û
>W1711428614
MIIF01000027
Bacillota
Moorella thermoacetica [MIIF]
20
94
+
Asn
GTT
[ENA]
¡û
>W1711428615
MIIF01000042
Bacillota
Moorella thermoacetica [MIIF]
108
34
-
Asn
GTT
[ENA]
¡û
>W1711428616
MIIF01000045
Bacillota
Moorella thermoacetica [MIIF]
20
94
+
Asn
GTT
[ENA]
¡û
>C171055168
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
152479
152553
+
Asn
GTT
-
¡û
>C171055171
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
159919
159993
+
Asn
GTT
-
¡û
>C171055186
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
808108
808182
+
Asn
GTT
-
¡û
>C171058941
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
149807
149881
+
Asn
GTT
-
¡û
>C171058952
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
576335
576409
+
Asn
GTT
-
¡û
>C014160
CP000232
Bacillota
Moorella thermoacetica [CP000232]
153169
153243
+
Asn
GTT
[Ensembl]
¡û
>C014171
CP000232
Bacillota
Moorella thermoacetica [CP000232]
649555
649629
+
Asn
GTT
[Ensembl]
¡û
>WENV181404065
OGBZ01000343
[OGBZ] sediment metagenome; hot spring sediment
2014
1940
-
Asn
GTT
[ENA]
¢þ
>W141229801
BARR01000027
Bacillota
Moorella thermoacetica Y72 [BARR]
3265
3339
+
Asn
GTT
[ENA]
¡û
>W141229812
BARR01000033
Bacillota
Moorella thermoacetica Y72 [BARR]
140748
140822
+
Asn
GTT
[ENA]
¡û
>WENV170676417
LDZR01002592
[LDZR] terrestrial metagenome; oil reservoir sample K2
11811
11885
+
Asn
GTT
[ENA]
¢þ
>WENV170723702
LSQX01278601
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3762
3688
-
Asn
GTT
[ENA]
¢þ
>WENV170726619
LSQX01387720
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8
82
+
Asn
GTT
[ENA]
¢þ
>WENV170727102
LSQX01404909
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
35
109
+
Asn
GTT
[ENA]
¢þ
>WENV170969773
MTKW01039026
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
76
2
-
Asn
GTT
[ENA]
¢þ
>C191073414
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
152465
152539
+
Asn
GTT
-
¡û
>C191073417
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
159896
159970
+
Asn
GTT
-
¡û
>C191073428
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
656277
656351
+
Asn
GTT
-
¡û
>W09100918
AADT03000003
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
131628
131554
-
Asn
GTT
[ENA]
¡û
>W09100923
AADT03000007
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
10745
10671
-
Asn
GTT
[ENA]
¡û
>W09100964
AADT03000052
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
5541
5615
+
Asn
GTT
[ENA]
¡û
>W1910180133
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1067576
1067502
-
Asn
GTT
[ENA]
¡û
>W1910180134
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1059395
1059321
-
Asn
GTT
[ENA]
¡û
>W1810010423
BFFN01000003
Bacillota
Moorella sp. Hama-1 [BFFN]
43
117
+
Asn
GTT
[ENA]
¡û
>W1810010448
BFFN01000012
Bacillota
Moorella sp. Hama-1 [BFFN]
95342
95416
+
Asn
GTT
[ENA]
¡û
>W1810010463
BFFN01000042
Bacillota
Moorella sp. Hama-1 [BFFN]
1182
1256
+
Asn
GTT
[ENA]
¡û
>W1810367264
PVXL01000019
Bacillota
Moorella stamsii DSM 26271 [PVXL]
31768
31694
-
Asn
GTT
[ENA]
¡û
>W1810367309
PVXL01000069
Bacillota
Moorella stamsii DSM 26271 [PVXL]
3287
3361
+
Asn
GTT
[ENA]
¡û
>W1810367336
PVXM01000016
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
1209
1135
-
Asn
GTT
[ENA]
¡û
>W1810367337
PVXM01000023
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
56921
56847
-
Asn
GTT
[ENA]
¡û
>W1810367361
PVXM01000063
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
125
51
-
Asn
GTT
[ENA]
¡û
>C151094346
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
152820
152894
+
Asn
GTT
-
¡û
>C151094396
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
152819
152893
+
Asn
GTT
-
¡û
>C151094407
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
647751
647825
+
Asn
GTT
-
¡û
>C153001316
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
563863
563937
+
Asn
GTT
-
¡û
>W1510100244
CELZ01000013
Bacillota
Moorella glycerini NMP [CELZ]
32737
32663
-
Asn
GTT
[ENA]
¡û
>W1510100259
CELZ01000025
Bacillota
Moorella glycerini NMP [CELZ]
11917
11991
+
Asn
GTT
[ENA]
¡û
>W1510100296
CELZ01000071
Bacillota
Moorella glycerini NMP [CELZ]
3940
3866
-
Asn
GTT
[ENA]
¡û
>W1610925316
LTBC01000020
Bacillota
Moorella mulderi DSM 14980 [LTBC]
16737
16663
-
Asn
GTT
[ENA]
¡û
>W1610925318
LTBC01000035
Bacillota
Moorella mulderi DSM 14980 [LTBC]
145
71
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK