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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342936 (85 seq.)
>W131087075
AOCE01000117
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AOCE]
6866
6793
-
Arg
CCT
[ENA]
¡û
>W131166265
ARCI01000006
Bacillota
Streptococcus thoraltensis DSM 12221 [ARCI]
154268
154339
+
Arg
CCT
[ENA]
¡û
>W131238172
AUUD01000003
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AUUD]
90425
90352
-
Arg
CCT
[ENA]
¡û
>WENV180193792
OAZW01009564
[OAZW] human gut metagenome; faeces
553
626
+
Arg
CCT
[ENA]
¢þ
>WENV180203933
OBAG01098634
[OBAG] human gut metagenome; human gut
35
106
+
Arg
CCT
[ENA]
¢þ
>WENV180432428
OBWI01002074
[OBWI] human gut metagenome; faeces
3073
3146
+
Arg
CCT
[ENA]
¢þ
>WENV180448236
OBXE01001893
[OBXE] human gut metagenome; faeces
2380
2453
+
Arg
CCT
[ENA]
¢þ
>WENV180783124
ODIQ01001889
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1351
1422
+
Arg
CCT
[ENA]
¢þ
>WENV181218599
OFCM01011003
[OFCM] metagenome; Human gut stool
275
348
+
Arg
CCT
[ENA]
¢þ
>WENV181457759
OGEI01013273
[OGEI] metagenome; Human gut stool
166
95
-
Arg
CCT
[ENA]
¢þ
>WENV181468392
OGES01002159
[OGES] metagenome; Human gut stool
12693
12764
+
Arg
CCT
[ENA]
¢þ
>W141145870
AWVA01000066
Bacillota
Streptococcus sobrinus W1703 [AWVA]
56408
56335
-
Arg
CCT
[ENA]
¡û
>WENV181567786
OGJJ01067432
[OGJJ] metagenome; Human gut stool
471
542
+
Arg
CCT
[ENA]
¢þ
>WENV181891705
OGXO01072845
[OGXO] human gut metagenome; faeces
32
105
+
Arg
CCT
[ENA]
¢þ
>WENV182047020
OHDW01005846
[OHDW] human gut metagenome; feces
782
853
+
Arg
CCT
[ENA]
¢þ
>WENV182125449
OHJS01006669
[OHJS] human gut metagenome; feces
1791
1720
-
Arg
CCT
[ENA]
¢þ
>WENV182401740
OIER01009031
[OIER] human gut metagenome; human gut
1398
1469
+
Arg
CCT
[ENA]
¢þ
>WENV182488431
OIRZ01019740
[OIRZ] human gut metagenome; human gut
149
78
-
Arg
CCT
[ENA]
¢þ
>WENV182508242
OIVP01008242
[OIVP] human gut metagenome; human gut
797
868
+
Arg
CCT
[ENA]
¢þ
>WENV182833130
OKER01000252
[OKER] human gut metagenome; human gut
13308
13379
+
Arg
CCT
[ENA]
¢þ
>W141291705
JATP01000008
Bacillota
Streptococcus sp. CM7 [JATP]
180
109
-
Arg
CCT
[ENA]
¡û
>WENV182952628
OKVW01004868
[OKVW] human gut metagenome; human gut
429
358
-
Arg
CCT
[ENA]
¢þ
>WENV183131906
OLOB01000133
[OLOB] human gut metagenome; faeces
61367
61440
+
Arg
CCT
[ENA]
¢þ
>WENV183307281
OLTD01014122
[OLTD] human gut metagenome; faeces
205
134
-
Arg
CCT
[ENA]
¢þ
>WENV183360514
OLXI01030333
[OLXI] human gut metagenome; feces
637
708
+
Arg
CCT
[ENA]
¢þ
>WENV183374933
OLXZ01033642
[OLXZ] human gut metagenome; feces
655
584
-
Arg
CCT
[ENA]
¢þ
>C181069641
CP022601
Bacillota
Streptococcus pluranimalium 14A0014 [CP022601]
661094
661165
+
Arg
CCT
-
¡û
>C181118559
CP025536
Bacillota
Streptococcus pluranimalium TH11417 [CP025536]
596580
596651
+
Arg
CCT
-
¡û
>C181179388
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
1438731
1438658
-
Arg
CCT
-
¡û
>C181179433
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
725496
725569
+
Arg
CCT
-
¡û
>C181180456
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
1435878
1435805
-
Arg
CCT
-
¡û
>C181180519
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
1435879
1435806
-
Arg
CCT
-
¡û
>C181209647
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
1438819
1438746
-
Arg
CCT
-
¡û
>C181209845
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
1435950
1435877
-
Arg
CCT
-
¡û
>W141701895
JMLC01000003
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [JMLC]
78982
79055
+
Arg
CCT
[ENA]
¡û
>C141002322
CP003858
Bacillota
Streptococcus intermedius C270 [CP003858]
888098
888027
-
Arg
CCT
[Ensembl]
¡û
>W1911162458
NPOU01000001
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
398016
398089
+
Arg
CCT
[ENA]
¡û
>W1810838667
QSTK01000004
Bacillota
Streptococcus vestibularis OM08-1 [QSTK]
16961
16890
-
Arg
CCT
[ENA]
¡û
>W1511440509
JUPI01000004
Bacillota
Streptococcus parasanguinis 886_SPAR [JUPI]
7426
7355
-
Arg
CCT
[ENA]
¡û
>W11139870
AEKN01000003
Bacillota
Streptococcus downei F0415 [AEKN]
129102
129029
-
Arg
CCT
[ENA]
¡û
>W11149574
AEUV01000012
Bacillota
Streptococcus criceti HS-6 [AEUV]
523827
523754
-
Arg
CCT
[ENA]
¡û
>W11179131
AGGB01000008
Bacillota
Streptococcus sobrinus TCI-9 [AGGB]
15135
15208
+
Arg
CCT
[ENA]
¡û
>W11179160
AGGC01000120
Bacillota
Streptococcus sobrinus TCI-13 [AGGC]
817
744
-
Arg
CCT
[ENA]
¡û
>W11179173
AGGD01000016
Bacillota
Streptococcus sobrinus TCI-16 [AGGD]
811
738
-
Arg
CCT
[ENA]
¡û
>W11179203
AGGE01000033
Bacillota
Streptococcus sobrinus TCI-28 [AGGE]
817
744
-
Arg
CCT
[ENA]
¡û
>W11179284
AGGH01000017
Bacillota
Streptococcus sobrinus TCI-54 [AGGH]
818
745
-
Arg
CCT
[ENA]
¡û
>W11179322
AGGI01000046
Bacillota
Streptococcus sobrinus TCI-56 [AGGI]
11872
11945
+
Arg
CCT
[ENA]
¡û
>W11179354
AGGJ01000123
Bacillota
Streptococcus sobrinus TCI-61 [AGGJ]
367
440
+
Arg
CCT
[ENA]
¡û
>W11179376
AGGK01000074
Bacillota
Streptococcus sobrinus TCI-77 [AGGK]
10169
10242
+
Arg
CCT
[ENA]
¡û
>W11179407
AGGL01000046
Bacillota
Streptococcus sobrinus TCI-79 [AGGL]
4486
4559
+
Arg
CCT
[ENA]
¡û
>W11179434
AGGM01000023
Bacillota
Streptococcus sobrinus TCI-80 [AGGM]
818
745
-
Arg
CCT
[ENA]
¡û
>W11179469
AGGN01000061
Bacillota
Streptococcus sobrinus TCI-89 [AGGN]
10747
10820
+
Arg
CCT
[ENA]
¡û
>W11179497
AGGO01000030
Bacillota
Streptococcus sobrinus TCI-98 [AGGO]
807
734
-
Arg
CCT
[ENA]
¡û
>W11179537
AGGP01000090
Bacillota
Streptococcus sobrinus TCI-107 [AGGP]
807
734
-
Arg
CCT
[ENA]
¡û
>W11179563
AGGQ01000308
Bacillota
Streptococcus sobrinus TCI-119 [AGGQ]
817
744
-
Arg
CCT
[ENA]
¡û
>W11179584
AGGR01000025
Bacillota
Streptococcus sobrinus TCI-121 [AGGR]
2273
2200
-
Arg
CCT
[ENA]
¡û
>W11179632
AGGS01000111
Bacillota
Streptococcus sobrinus TCI-124 [AGGS]
4909
4982
+
Arg
CCT
[ENA]
¡û
>W11179652
AGGT01000020
Bacillota
Streptococcus sobrinus TCI-342 [AGGT]
9316
9389
+
Arg
CCT
[ENA]
¡û
>W11179674
AGGU01000006
Bacillota
Streptococcus sobrinus TCI-345 [AGGU]
5164
5237
+
Arg
CCT
[ENA]
¡û
>W11179712
AGGV01000194
Bacillota
Streptococcus sobrinus TCI-348 [AGGV]
663
736
+
Arg
CCT
[ENA]
¡û
>W11179740
AGGW01000269
Bacillota
Streptococcus sobrinus TCI-349 [AGGW]
2372
2445
+
Arg
CCT
[ENA]
¡û
>W11179771
AGGX01000179
Bacillota
Streptococcus sobrinus TCI-352 [AGGX]
3138
3211
+
Arg
CCT
[ENA]
¡û
>W11179787
AGGY01000017
Bacillota
Streptococcus sobrinus TCI-355 [AGGY]
10733
10660
-
Arg
CCT
[ENA]
¡û
>W11179816
AGGZ01000031
Bacillota
Streptococcus sobrinus TCI-357 [AGGZ]
808
735
-
Arg
CCT
[ENA]
¡û
>W11179845
AGHA01000045
Bacillota
Streptococcus sobrinus TCI-363 [AGHA]
1570
1643
+
Arg
CCT
[ENA]
¡û
>W11179879
AGHB01000086
Bacillota
Streptococcus sobrinus TCI-366 [AGHB]
2345
2272
-
Arg
CCT
[ENA]
¡û
>W11179909
AGHC01000067
Bacillota
Streptococcus sobrinus TCI-367 [AGHC]
2010
2083
+
Arg
CCT
[ENA]
¡û
>W11179965
AGHE01000080
Bacillota
Streptococcus sobrinus TCI-374 [AGHE]
5677
5750
+
Arg
CCT
[ENA]
¡û
>W11179995
AGHF01000269
Bacillota
Streptococcus sobrinus TCI-376 [AGHF]
2372
2445
+
Arg
CCT
[ENA]
¡û
>W11180014
AGHG01000022
Bacillota
Streptococcus sobrinus TCI-377 [AGHG]
5364
5437
+
Arg
CCT
[ENA]
¡û
>W11180057
AGHH01000291
Bacillota
Streptococcus sobrinus TCI-381 [AGHH]
817
744
-
Arg
CCT
[ENA]
¡û
>W11180075
AGHI01000011
Bacillota
Streptococcus sobrinus TCI-384 [AGHI]
28505
28578
+
Arg
CCT
[ENA]
¡û
>W11180104
AGHJ01000006
Bacillota
Streptococcus sobrinus TCI-392 [AGHJ]
9855
9928
+
Arg
CCT
[ENA]
¡û
>W11180136
AGHK01000031
Bacillota
Streptococcus sobrinus TCI-395 [AGHK]
817
744
-
Arg
CCT
[ENA]
¡û
>W11180165
AGHL01000137
Bacillota
Streptococcus sobrinus TCI-396 [AGHL]
4463
4536
+
Arg
CCT
[ENA]
¡û
>W11180187
AGHM01000075
Bacillota
Streptococcus sobrinus TCI-2 [AGHM]
817
744
-
Arg
CCT
[ENA]
¡û
>W11180261
AGHO01003148
Bacillota
Streptococcus sobrinus TCI-157 [AGHO]
366
293
-
Arg
CCT
[ENA]
¡û
>W11180297
AGHP01000283
Bacillota
Streptococcus sobrinus TCI-160 [AGHP]
144
217
+
Arg
CCT
[ENA]
¡û
>W11180323
AGHQ01000225
Bacillota
Streptococcus sobrinus TCI-172 [AGHQ]
2055
2128
+
Arg
CCT
[ENA]
¡û
>W11180345
AGHR01000092
Bacillota
Streptococcus sobrinus TCI-175 [AGHR]
2034
1961
-
Arg
CCT
[ENA]
¡û
>W11180381
AGHS01000630
Bacillota
Streptococcus sobrinus TCI-194 [AGHS]
565
492
-
Arg
CCT
[ENA]
¡û
>W11180396
AGHT01000043
Bacillota
Streptococcus sobrinus TCI-200 [AGHT]
818
745
-
Arg
CCT
[ENA]
¡û
>W11180429
AGHU01000043
Bacillota
Streptococcus sobrinus TCI-215 [AGHU]
16006
15933
-
Arg
CCT
[ENA]
¡û
>W11180459
AGHV01000103
Bacillota
Streptococcus sobrinus TCI-336 [AGHV]
816
743
-
Arg
CCT
[ENA]
¡û
>C161078065
CP014835
Bacillota
Streptococcus halotolerans HTS9 [CP014835]
202301
202372
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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