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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344380 (132 seq.)
>W1710880002
LMSA01000003
Actinomycetota
Knoellia sp. Soil729 [LMSA]
418447
418373
-
Val
GAC
[ENA]
¡û
>W131206150
ATFL01000014
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
652628
652554
-
Val
GAC
[ENA]
¡û
>W1711774095
MVIW01000001
Actinomycetota
Actinomyces denticolens [MVIW]
76127
76055
-
Val
GAC
[ENA]
¡û
>W1711774126
MVIW01000017
Actinomycetota
Actinomyces denticolens [MVIW]
35588
35516
-
Val
GAC
[ENA]
¡û
>C171073452
CP018135
Actinomycetota
Neomicrococcus aestuarii B18 [CP018135]
193573
193499
-
Val
GAC
-
¡û
>C171108546
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
1167966
1167894
-
Val
GAC
-
¡û
>C171130138
LT635457
Actinomycetota
Actinomyces pacaensis Marseille-P2985 [LT635457]
380855
380927
+
Val
GAC
-
¡û
>WENV180000049
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2158
2232
+
Val
GAC
[ENA]
¢þ
>WENV180103019
OAPA01000119
[OAPA] marine metagenome; ENVO:00002010
3546
3472
-
Val
GAC
[ENA]
¢þ
>WENV180104096
OAPB01080377
[OAPB] marine metagenome; Sterile flask
112
186
+
Val
GAC
[ENA]
¢þ
>WENV180111534
OAPN01101580
[OAPN] marine metagenome; 2011
189
261
+
Val
GAC
[ENA]
¢þ
>WENV180113956
OAPR01071457
[OAPR] marine metagenome; seawater
71
-1
-
Val
GAC
[ENA]
¢þ
>WENV180208942
OBAK01000386
[OBAK] marine metagenome; ENVO.00002150
2103
2174
+
Val
GAC
[ENA]
¢þ
>WENV180209456
OBAL01000981
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1347
1273
-
Val
GAC
[ENA]
¢þ
>WENV180212243
OBAN01001344
[OBAN] marine metagenome; ENVO 00002150
147
73
-
Val
GAC
[ENA]
¢þ
>WENV180356723
OBNL01013204
[OBNL] marine metagenome; ENVO:00002010
377
303
-
Val
GAC
[ENA]
¢þ
>WENV180360493
OBNU01000206
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
5973
6047
+
Val
GAC
[ENA]
¢þ
>WENV180361745
OBNW01000234
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
4925
4998
+
Val
GAC
[ENA]
¢þ
>WENV180363769
OBNZ01005779
[OBNZ] marine metagenome; ENVO:00002010
354
280
-
Val
GAC
[ENA]
¢þ
>WENV180370275
OBOH01058147
[OBOH] marine metagenome; ENVO:00002010
114
186
+
Val
GAC
[ENA]
¢þ
>WENV180383915
OBOV01076339
[OBOV] marine metagenome; ENV:00002010
224
296
+
Val
GAC
[ENA]
¢þ
>WENV180384087
OBOW01005949
[OBOW] marine metagenome; seawater
349
421
+
Val
GAC
[ENA]
¢þ
>WENV180391877
OBPN01080707
[OBPN] marine metagenome; seawater
194
268
+
Val
GAC
[ENA]
¢þ
>WENV180393762
OBPR01006556
[OBPR] marine metagenome; ENVO:00002042
348
422
+
Val
GAC
[ENA]
¢þ
>WENV180399009
OBQE01013988
[OBQE] marine metagenome; ENVO.00002150
13
85
+
Val
GAC
[ENA]
¢þ
>WENV180399115
OBQG01000159
[OBQG] marine metagenome; ENV:00002010
2112
2184
+
Val
GAC
[ENA]
¢þ
>WENV180399278
OBQH01000183
[OBQH] marine metagenome; ENV:00002010
1287
1359
+
Val
GAC
[ENA]
¢þ
>WENV180443842
OBWZ01000002
[OBWZ] human gut metagenome; faeces
172213
172141
-
Val
GAC
[ENA]
¢þ
>WENV180476684
OBYY01005720
[OBYY] human gut metagenome; faeces
154
82
-
Val
GAC
[ENA]
¢þ
>WENV180596632
OCPI01000161
[OCPI] human gut metagenome; faeces
38703
38775
+
Val
GAC
[ENA]
¢þ
>WENV180784104
ODIQ01142737
[ODIQ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180793205
ODIW01010486
[ODIW] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180816905
ODJP01107027
[ODJP] human metagenome; G_DNA_Tongue dorsum
56
128
+
Val
GAC
[ENA]
¢þ
>WENV180831443
ODKB01198215
[ODKB] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180855017
ODKX01023569
[ODKX] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180866891
ODLJ01150599
[ODLJ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180874076
ODLP01137454
[ODLP] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180875164
ODLQ01041114
[ODLQ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180881198
ODLZ01213869
[ODLZ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180897677
ODNI01054449
[ODNI] human metagenome; G_DNA_Tongue dorsum
309
381
+
Val
GAC
[ENA]
¢þ
>WENV180901308
ODOJ01126163
[ODOJ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180901442
ODOK01000096
[ODOK] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180921083
ODTH01111254
[ODTH] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180930134
ODTN01088010
[ODTN] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180950345
ODUG01192431
[ODUG] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180954513
ODUJ01003264
[ODUJ] human metagenome; G_DNA_Tongue dorsum
6096
6168
+
Val
GAC
[ENA]
¢þ
>WENV180968976
ODUT01159784
[ODUT] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180979856
ODVC01005938
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
6
80
+
Val
GAC
[ENA]
¢þ
>WENV180989135
ODVL01046571
[ODVL] human metagenome; G_DNA_Tongue dorsum
413
485
+
Val
GAC
[ENA]
¢þ
>WENV180991426
ODVN01084610
[ODVN] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181015954
ODWR01000034
[ODWR] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181021779
ODWV01044321
[ODWV] human metagenome; G_DNA_Tongue dorsum
422
494
+
Val
GAC
[ENA]
¢þ
>WENV181033254
ODXN01003870
[ODXN] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181046099
ODXW01006782
[ODXW] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181069724
ODZZ01201012
[ODZZ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181097702
OECA01021290
[OECA] human metagenome; G_DNA_Tongue dorsum
195
123
-
Val
GAC
[ENA]
¢þ
>WENV181109152
OEEJ01010752
[OEEJ] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181120603
OEFK01016328
[OEFK] marine metagenome; ENVO:00002010 seawater
84
10
-
Val
GAC
[ENA]
¢þ
>WENV181126500
OEFV01128389
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
74
148
+
Val
GAC
[ENA]
¢þ
>WENV181128989
OEFX01001714
[OEFX] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV181135025
OEGG01001874
[OEGG] human metagenome; G_DNA_Tongue dorsum
3942
3870
-
Val
GAC
[ENA]
¢þ
>WENV181176027
OEJQ01127170
[OEJQ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181217623
OFCL01000001
[OFCL] metagenome; Human gut stool
258672
258744
+
Val
GAC
[ENA]
¢þ
>WENV181218613
OFCN01000001
[OFCN] metagenome; Human gut stool
552
480
-
Val
GAC
[ENA]
¢þ
>WENV181369664
OFQP01018631
[OFQP] freshwater metagenome; Freshwater Lake
391
319
-
Val
GAC
[ENA]
¢þ
>WENV181370856
OFQT01021338
[OFQT] freshwater metagenome; Freshwater Lake
245
317
+
Val
GAC
[ENA]
¢þ
>WENV181392984
OFRX01026212
[OFRX] seawater metagenome; seawater
599
674
+
Val
GAC
[ENA]
¢þ
>W141241053
CAGY01000001
Actinomycetota
Actinomyces sp. ph3 [CAGY]
169818
169746
-
Val
GAC
[ENA]
¡û
>WENV183223564
OLQM01035376
[OLQM] human gut metagenome; faeces
401
474
+
Val
GAC
[ENA]
¢þ
>WENV183620942
OOFT01000255
[OOFT] marine metagenome; sea ice
3008
3083
+
Val
GAC
[ENA]
¢þ
>WENV183712138
PDWI01090171
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1860
1932
+
Val
GAC
[ENA]
¢þ
>ENV08001208
ABMU01086495
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
8
-
Val
GAC
[ENA]
¡û
>WENV183790499
PPYF01411599
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4424
4352
-
Val
GAC
[ENA]
¢þ
>WENV170602773
FUWD010263042
[FUWD] metagenome; unknown
562
636
+
Val
GAC
[ENA]
¢þ
>WENV170614489
FUWD012834969
[FUWD] metagenome; unknown
874
800
-
Val
GAC
[ENA]
¢þ
>WENV170614492
FUWD012834970
[FUWD] metagenome; unknown
106
32
-
Val
GAC
[ENA]
¢þ
>WENV170617547
FUWD012929498
[FUWD] metagenome; unknown
260
335
+
Val
GAC
[ENA]
¢þ
>WENV170619962
FUWD013023621
[FUWD] metagenome; unknown
1664
1589
-
Val
GAC
[ENA]
¢þ
>WENV170628093
FUWD013241673
[FUWD] metagenome; unknown
1664
1589
-
Val
GAC
[ENA]
¢þ
>WENV170922882
MDTG01039477
[MDTG] marine metagenome; seawater
100
172
+
Val
GAC
[ENA]
¢þ
>WENV170951614
MEHZ011561481
[MEHZ] marine metagenome; marine surface water
289
363
+
Val
GAC
[ENA]
¢þ
>WENV170951638
MEHZ011562055
[MEHZ] marine metagenome; marine surface water
2460
2385
-
Val
GAC
[ENA]
¢þ
>C181003380
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1375090
1375162
+
Val
GAC
-
¡û
>C181003409
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1632512
1632440
-
Val
GAC
-
¡û
>C191007062
AP019307
Actinomycetota
Nocardioides baekrokdamisoli KCTC 39748 [AP019307]
323740
323814
+
Val
GAC
-
¡û
>W141730507
JNIK01000005
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
53339
53265
-
Val
GAC
[ENA]
¡û
>W141750772
JNSD01000002
Actinomycetota
actinobacterium acMicro-4 [JNSD]
201305
201379
+
Val
GAC
[ENA]
¡û
>W1910231915
FPEG01000002
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
529589
529515
-
Val
GAC
[ENA]
¡û
>W1910340151
FTLP01000016
Actinomycetota
Actinomyces marseillensis Marseille-P2818 [FTLP]
158161
158233
+
Val
GAC
[ENA]
¡û
>W1910442538
FWFH01000152
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
254662
254735
+
Val
GAC
[ENA]
¡û
>W1910442542
FWFH01000152
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
253679
253606
-
Val
GAC
[ENA]
¡û
>W1910548124
FZOH01000006
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
170576
170650
+
Val
GAC
[ENA]
¡û
>W1910550333
FZQV01000004
Actinomycetota
Ruaniaceae bacterium KH17 [FZQV]
44153
44225
+
Val
GAC
[ENA]
¡û
>W1911726665
QSWH01000006
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
28446
28520
+
Val
GAC
[ENA]
¡û
>W1911726669
QSWH01000006
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
27624
27550
-
Val
GAC
[ENA]
¡û
>W1911768072
QXFN01000004
Actinomycetota
Cellulomonas telluris CPCC 204705 [QXFN]
568133
568207
+
Val
GAC
[ENA]
¡û
>W1911783425
QXTG01000002
Actinomycetota
Amnibacterium setariae DD4a [QXTG]
691206
691134
-
Val
GAC
[ENA]
¡û
>SRA1001283
SRR001062.270190
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
82
8
-
Val
GAC
[SRA]
>SRA1001286
SRR001062.282413
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
82
8
-
Val
GAC
[SRA]
>W1810167507
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
80396
80468
+
Val
GAC
[ENA]
¡û
>W1810167509
PJIN01000010
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
80664
80736
+
Val
GAC
[ENA]
¡û
>W1810675423
QKKY01000119
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
1631
1705
+
Val
GAC
[ENA]
¡û
>W1810733417
QOHG01000004
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
93743
93816
+
Val
GAC
[ENA]
¡û
>SRA1045311
SRR035093.64614
454 Sequencing (SRP001814)
211
137
-
Val
GAC
[SRA]
>SRA1045929
SRR035093.201241
454 Sequencing (SRP001814)
410
484
+
Val
GAC
[SRA]
>SRA1046271
SRR035093.268095
454 Sequencing (SRP001814)
276
202
-
Val
GAC
[SRA]
>SRA1046385
SRR035093.294075
454 Sequencing (SRP001814)
222
147
-
Val
GAC
[SRA]
>SRA1046779
SRR035093.382624
454 Sequencing (SRP001814)
418
344
-
Val
GAC
[SRA]
>SRA1046914
SRR035093.417924
454 Sequencing (SRP001814)
236
162
-
Val
GAC
[SRA]
>SRA1046983
SRR035093.429557
454 Sequencing (SRP001814)
239
165
-
Val
GAC
[SRA]
>SRA1047506
SRR035093.560469
454 Sequencing (SRP001814)
261
335
+
Val
GAC
[SRA]
>C10101550
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
1564302
1564376
+
Val
GAC
[Ensembl]
¡û
>C10101583
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
1563319
1563245
-
Val
GAC
[Ensembl]
¡û
>C11114913
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
2507226
2507152
-
Val
GAC
[Ensembl]
¡û
>W1511351002
JRMV01000281
Actinomycetota
Actinomyces sp. S6-Spd3 [JRMV]
450097
450169
+
Val
GAC
[ENA]
¡û
>W1511460301
JVLH01000013
Actinomycetota
Trueperella pyogenes 331_TPYO [JVLH]
55
127
+
Val
GAC
[ENA]
¡û
>W1511475420
JWDF01000004
Actinomycetota
Streptantibioticus cattleyicolor 1093_SCAT [JWDF]
184
112
-
Val
GAC
[ENA]
¡û
>W11177852
AGBX01000006
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
332677
332751
+
Val
GAC
[ENA]
¡û
>W11177854
AGBX01000006
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
331984
331910
-
Val
GAC
[ENA]
¡û
>W121063481
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
199813
199739
-
Val
GAC
[ENA]
¡û
>W1610051587
BBHA01000015
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
4169
4095
-
Val
GAC
[ENA]
¡û
>W1610051604
BBHA01000497
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
282
357
+
Val
GAC
[ENA]
¡û
>W121018136
AGSO01000015
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
49030
48956
-
Val
GAC
[ENA]
¡û
>W1610742348
LMSA01000003
Actinomycetota
Knoellia sp. Soil729 [LMSA]
418447
418373
-
Val
GAC
[ENA]
¡û
>W1710047965
BBHA01000015
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
4169
4095
-
Val
GAC
[ENA]
¡û
>W1710047982
BBHA01000497
Actinomycetota
Brachybacterium zhongshanense JCM 15471 [BBHA]
282
357
+
Val
GAC
[ENA]
¡û
>W1710082838
BDIO01000007
Actinomycetota
Actinomyces denticolens [BDIO]
122040
122112
+
Val
GAC
[ENA]
¡û
>W1710082843
BDIO01000007
Actinomycetota
Actinomyces denticolens [BDIO]
379430
379358
-
Val
GAC
[ENA]
¡û
>W1710523584
FNIC01000006
Actinomycetota
Nocardioides szechwanensis [FNIC]
110253
110327
+
Val
GAC
[ENA]
¡û
>W1710533053
FNQV01000002
Actinomycetota
Bowdeniella nasicola [FNQV]
195521
195595
+
Val
GAC
[ENA]
¡û
>W1710548977
FOEE01000007
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
145422
145496
+
Val
GAC
[ENA]
¡û
>W1710575860
FOZN01000004
Actinomycetota
Agrococcus baldri [FOZN]
407812
407738
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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