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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345027 (99 seq.)
>W1711284740
LZRK01000005
Actinomycetota
Actinomyces vulturis VUL7 [LZRK]
36550
36624
+
Asn
GTT
[ENA]
¡û
>W1711724116
MTPX01000015
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
67744
67816
+
Asn
GTT
[ENA]
¡û
>W1711774117
MVIW01000012
Actinomycetota
Actinomyces denticolens [MVIW]
49708
49780
+
Asn
GTT
[ENA]
¡û
>W131222767
AUBN01000015
Actinomycetota
Actinomyces gerencseriae DSM 6844 [AUBN]
26128
26056
-
Asn
GTT
[ENA]
¡û
>WENV180698214
ODDE01095677
[ODDE] human metagenome; G_DNA_Supragingival plaque
120
192
+
Asn
GTT
[ENA]
¢þ
>WENV180732655
ODGY01002149
[ODGY] human metagenome; G_DNA_Supragingival plaque
103
30
-
Asn
GTT
[ENA]
¢þ
>WENV180732680
ODGY01002424
[ODGY] human metagenome; G_DNA_Supragingival plaque
2888
2815
-
Asn
GTT
[ENA]
¢þ
>WENV180734507
ODGZ01010876
[ODGZ] human metagenome; G_DNA_Supragingival plaque
9
81
+
Asn
GTT
[ENA]
¢þ
>WENV180736308
ODHB01022568
[ODHB] human metagenome; G_DNA_Supragingival plaque
230
302
+
Asn
GTT
[ENA]
¢þ
>WENV180738951
ODHD01001617
[ODHD] human metagenome; G_DNA_Supragingival plaque
97
25
-
Asn
GTT
[ENA]
¢þ
>WENV180750294
ODHS01001272
[ODHS] human metagenome; G_DNA_Supragingival plaque
7994
8066
+
Asn
GTT
[ENA]
¢þ
>WENV180764594
ODIB01000083
[ODIB] human metagenome; G_DNA_Supragingival plaque
8906
8979
+
Asn
GTT
[ENA]
¢þ
>WENV180777227
ODIL01000529
[ODIL] human metagenome; G_DNA_Supragingival plaque
6887
6959
+
Asn
GTT
[ENA]
¢þ
>WENV180778363
ODIM01004310
[ODIM] human metagenome; G_DNA_Supragingival plaque
9
81
+
Asn
GTT
[ENA]
¢þ
>WENV180781594
ODIP01001046
[ODIP] human metagenome; G_DNA_Supragingival plaque
5669
5741
+
Asn
GTT
[ENA]
¢þ
>WENV180786994
ODIS01000815
[ODIS] human metagenome; G_DNA_Supragingival plaque
10975
11049
+
Asn
GTT
[ENA]
¢þ
>WENV180796345
ODJB01003498
[ODJB] human metagenome; G_DNA_Supragingival plaque
4506
4580
+
Asn
GTT
[ENA]
¢þ
>WENV180798124
ODJB01277092
[ODJB] human metagenome; G_DNA_Supragingival plaque
216
287
+
Asn
GTT
[ENA]
¢þ
>WENV180801005
ODJD01004788
[ODJD] human metagenome; G_DNA_Supragingival plaque
137
65
-
Asn
GTT
[ENA]
¢þ
>WENV180801251
ODJD01016523
[ODJD] human metagenome; G_DNA_Supragingival plaque
137
65
-
Asn
GTT
[ENA]
¢þ
>WENV180804308
ODJG01001601
[ODJG] human metagenome; G_DNA_Supragingival plaque
6838
6910
+
Asn
GTT
[ENA]
¢þ
>WENV180813622
ODJO01001481
[ODJO] human metagenome; G_DNA_Supragingival plaque
6423
6351
-
Asn
GTT
[ENA]
¢þ
>WENV180822245
ODJT01000121
[ODJT] human metagenome; G_DNA_Supragingival plaque
8869
8942
+
Asn
GTT
[ENA]
¢þ
>WENV180823844
ODJW01221645
[ODJW] human metagenome; G_DNA_Supragingival plaque
121
193
+
Asn
GTT
[ENA]
¢þ
>WENV180824700
ODJX01029218
[ODJX] human metagenome; G_DNA_Supragingival plaque
418
344
-
Asn
GTT
[ENA]
¢þ
>WENV180833518
ODKC01072899
[ODKC] human metagenome; G_DNA_Supragingival plaque
218
146
-
Asn
GTT
[ENA]
¢þ
>WENV180834689
ODKD01111430
[ODKD] human metagenome; G_DNA_Supragingival plaque
176
248
+
Asn
GTT
[ENA]
¢þ
>WENV180836323
ODKE01113684
[ODKE] human metagenome; G_DNA_Supragingival plaque
230
302
+
Asn
GTT
[ENA]
¢þ
>WENV180842660
ODKM01114625
[ODKM] human metagenome; G_DNA_Buccal mucosa
77
5
-
Asn
GTT
[ENA]
¢þ
>WENV180843172
ODKN01000756
[ODKN] human metagenome; G_DNA_Supragingival plaque
17976
17904
-
Asn
GTT
[ENA]
¢þ
>WENV180847372
ODKT01070905
[ODKT] human metagenome; G_DNA_Supragingival plaque
2
76
+
Asn
GTT
[ENA]
¢þ
>WENV180860196
ODLD01029808
[ODLD] human metagenome; G_DNA_Supragingival plaque
166
240
+
Asn
GTT
[ENA]
¢þ
>WENV180881495
ODMA01001363
[ODMA] human metagenome; G_DNA_Supragingival plaque
110
38
-
Asn
GTT
[ENA]
¢þ
>WENV180881637
ODMA01016785
[ODMA] human metagenome; G_DNA_Supragingival plaque
352
424
+
Asn
GTT
[ENA]
¢þ
>WENV180888275
ODMN01000371
[ODMN] human metagenome; G_DNA_Supragingival plaque
9
82
+
Asn
GTT
[ENA]
¢þ
>WENV180922137
ODTJ01001498
[ODTJ] human metagenome; G_DNA_Supragingival plaque
7768
7840
+
Asn
GTT
[ENA]
¢þ
>WENV180925299
ODTK01080133
[ODTK] human metagenome; G_DNA_Supragingival plaque
417
345
-
Asn
GTT
[ENA]
¢þ
>WENV180927492
ODTM01000848
[ODTM] human metagenome; G_DNA_Supragingival plaque
7331
7403
+
Asn
GTT
[ENA]
¢þ
>WENV180933681
ODTR01001197
[ODTR] human metagenome; G_DNA_Supragingival plaque
9
81
+
Asn
GTT
[ENA]
¢þ
>WENV180934658
ODTS01000890
[ODTS] human metagenome; G_DNA_Subgingival plaque
4886
4814
-
Asn
GTT
[ENA]
¢þ
>WENV180938273
ODTX01001163
[ODTX] human metagenome; G_DNA_Supragingival plaque
12781
12853
+
Asn
GTT
[ENA]
¢þ
>WENV180944406
ODUC01016647
[ODUC] human metagenome; G_DNA_Supragingival plaque
7
79
+
Asn
GTT
[ENA]
¢þ
>WENV180958244
ODUL01001595
[ODUL] human metagenome; G_DNA_Supragingival plaque
4987
4915
-
Asn
GTT
[ENA]
¢þ
>WENV180964450
ODUO01002652
[ODUO] human metagenome; G_DNA_Supragingival plaque
1492
1420
-
Asn
GTT
[ENA]
¢þ
>WENV180964707
ODUO01012191
[ODUO] human metagenome; G_DNA_Supragingival plaque
410
482
+
Asn
GTT
[ENA]
¢þ
>WENV180974200
ODUW01123264
[ODUW] human metagenome; G_DNA_Supragingival plaque
9
81
+
Asn
GTT
[ENA]
¢þ
>WENV180981805
ODVE01064081
[ODVE] human metagenome; G_DNA_Supragingival plaque
9
81
+
Asn
GTT
[ENA]
¢þ
>WENV180983488
ODVF01015578
[ODVF] human metagenome; G_DNA_Supragingival plaque
9
83
+
Asn
GTT
[ENA]
¢þ
>WENV180986889
ODVK01001691
[ODVK] human metagenome; G_DNA_Supragingival plaque
8739
8667
-
Asn
GTT
[ENA]
¢þ
>WENV180998949
ODVT01003842
[ODVT] human metagenome; G_DNA_Buccal mucosa
1475
1402
-
Asn
GTT
[ENA]
¢þ
>WENV181003370
ODVX01010377
[ODVX] human metagenome; G_DNA_Supragingival plaque
353
281
-
Asn
GTT
[ENA]
¢þ
>WENV181008141
ODWE01002219
[ODWE] human metagenome; G_DNA_Supragingival plaque
5685
5757
+
Asn
GTT
[ENA]
¢þ
>WENV181012640
ODWK01003404
[ODWK] human metagenome; G_DNA_Supragingival plaque
2858
2930
+
Asn
GTT
[ENA]
¢þ
>WENV181012869
ODWK01057250
[ODWK] human metagenome; G_DNA_Supragingival plaque
93
21
-
Asn
GTT
[ENA]
¢þ
>WENV181019293
ODWU01001719
[ODWU] human metagenome; G_DNA_Supragingival plaque
3376
3304
-
Asn
GTT
[ENA]
¢þ
>WENV181029650
ODXF01001481
[ODXF] human metagenome; G_DNA_Supragingival plaque
2724
2652
-
Asn
GTT
[ENA]
¢þ
>WENV181049914
ODYD01003249
[ODYD] human metagenome; G_DNA_Supragingival plaque
6176
6249
+
Asn
GTT
[ENA]
¢þ
>WENV181050215
ODYD01008930
[ODYD] human metagenome; G_DNA_Supragingival plaque
1346
1274
-
Asn
GTT
[ENA]
¢þ
>WENV181063469
ODYP01001013
[ODYP] human metagenome; G_DNA_Supragingival plaque
7651
7723
+
Asn
GTT
[ENA]
¢þ
>WENV181067124
ODZI01007317
[ODZI] human metagenome; G_DNA_Supragingival plaque
3375
3447
+
Asn
GTT
[ENA]
¢þ
>WENV181070623
OEAE01004425
[OEAE] human metagenome; G_DNA_Supragingival plaque
2864
2936
+
Asn
GTT
[ENA]
¢þ
>WENV181076576
OEAP01007974
[OEAP] human metagenome; G_DNA_Supragingival plaque
4208
4280
+
Asn
GTT
[ENA]
¢þ
>WENV181079091
OEAS01001894
[OEAS] human metagenome; G_DNA_Supragingival plaque
5044
4972
-
Asn
GTT
[ENA]
¢þ
>WENV181082850
OEAV01000883
[OEAV] human metagenome; G_DNA_Supragingival plaque
9077
9005
-
Asn
GTT
[ENA]
¢þ
>WENV181090571
OEBC01001267
[OEBC] human metagenome; G_DNA_Supragingival plaque
8146
8074
-
Asn
GTT
[ENA]
¢þ
>WENV181107020
OEEI01001423
[OEEI] human metagenome; G_DNA_Supragingival plaque
7698
7770
+
Asn
GTT
[ENA]
¢þ
>WENV181122191
OEFL01126193
[OEFL] human metagenome; G_DNA_Supragingival plaque
103
31
-
Asn
GTT
[ENA]
¢þ
>WENV181136910
OEGI01130955
[OEGI] human metagenome; G_DNA_Supragingival plaque
119
191
+
Asn
GTT
[ENA]
¢þ
>WENV181138172
OEGJ01144605
[OEGJ] human metagenome; G_DNA_Supragingival plaque
93
21
-
Asn
GTT
[ENA]
¢þ
>WENV181143559
OEHM01001992
[OEHM] human metagenome; G_DNA_Supragingival plaque
1473
1400
-
Asn
GTT
[ENA]
¢þ
>WENV181146581
OEHQ01010524
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1481
1409
-
Asn
GTT
[ENA]
¢þ
>WENV181152399
OEIA01001232
[OEIA] human metagenome; G_DNA_Supragingival plaque
9118
9190
+
Asn
GTT
[ENA]
¢þ
>WENV181156077
OEIE01002852
[OEIE] human metagenome; G_DNA_Supragingival plaque
1211
1283
+
Asn
GTT
[ENA]
¢þ
>WENV181161117
OEIK01156082
[OEIK] human metagenome; G_DNA_Supragingival plaque
135
63
-
Asn
GTT
[ENA]
¢þ
>WENV181178286
OEJS01136808
[OEJS] human metagenome; G_DNA_Supragingival plaque
98
26
-
Asn
GTT
[ENA]
¢þ
>WENV181179572
OEJT01008498
[OEJT] human metagenome; G_DNA_Supragingival plaque
2932
2860
-
Asn
GTT
[ENA]
¢þ
>WENV181180650
OEJU01000455
[OEJU] human metagenome; G_DNA_Supragingival plaque
10422
10350
-
Asn
GTT
[ENA]
¢þ
>WENV181182523
OEJV01014049
[OEJV] human metagenome; G_DNA_Supragingival plaque
535
607
+
Asn
GTT
[ENA]
¢þ
>WENV183720504
PDWJ01035911
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
935
861
-
Asn
GTT
[ENA]
¢þ
>C181003404
AP017896
Actinomycetota
Actinomyces sp. Chiba101 [AP017896]
1701660
1701588
-
Asn
GTT
-
¡û
>C181148255
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
1090694
1090768
+
Asn
GTT
-
¡û
>C181160818
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
1996764
1996691
-
Asn
GTT
-
¡û
>C191030398
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
2089663
2089590
-
Asn
GTT
-
¡û
>C191164741
CP039292
Actinomycetota
Actinomyces procaprae dk561 [CP039292]
1797454
1797381
-
Asn
GTT
-
¡û
>C191208247
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
211965
212038
+
Asn
GTT
-
¡û
>C191208614
LR134357
Actinomycetota
Actinomyces israelii NCTC12972 [LR134357]
787488
787562
+
Asn
GTT
-
¡û
>W141779274
JONS01000003
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
88288
88216
-
Asn
GTT
[ENA]
¡û
>W1910281462
FQTT01000012
Actinomycetota
Actinomyces glycerinitolerans [FQTT]
158571
158644
+
Asn
GTT
[ENA]
¡û
>W1810238729
PPPL01000061
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
77760
77833
+
Asn
GTT
[ENA]
¡û
>W1810705146
QMIN01000076
Actinomycetota
Actinomyces sp. Z5 [QMIN]
77057
76984
-
Asn
GTT
[ENA]
¡û
>W1810705185
QMIO01000008
Actinomycetota
Actinomyces sp. Z3 [QMIO]
75476
75549
+
Asn
GTT
[ENA]
¡û
>W11171069
AFQC01000049
Actinomycetota
Actinomyces sp. oral taxon 448 oral taxon 448 str. F0400 [AFQC]
75105
75179
+
Asn
GTT
[ENA]
¡û
>W121081411
AKFT01000011
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
18076
18004
-
Asn
GTT
[ENA]
¡û
>W121084612
AKIO01000015
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
83675
83747
+
Asn
GTT
[ENA]
¡û
>W1611042525
LZRK01000005
Actinomycetota
Actinomyces vulturis VUL7 [LZRK]
36550
36624
+
Asn
GTT
[ENA]
¡û
>W1710082833
BDIO01000007
Actinomycetota
Actinomyces denticolens [BDIO]
52898
52970
+
Asn
GTT
[ENA]
¡û
>W1710523229
FNHU01000006
Actinomycetota
Actinomyces ruminicola [FNHU]
183051
183125
+
Asn
GTT
[ENA]
¡û
>W1710524139
FNIM01000006
Actinomycetota
Actinomyces ruminicola [FNIM]
124891
124817
-
Asn
GTT
[ENA]
¡û
>W1710587396
FQYL01000009
Actinomycetota
Actinomyces denticolens [FQYL]
54120
54048
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK