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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345178 (73 seq.)
>WENV180727623
ODGU01008602
[ODGU] human metagenome; G_DNA_Supragingival plaque
757
685
-
Gln
CTG
[ENA]
¢þ
>WENV180734637
ODGZ01016083
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV180735804
ODHB01000766
[ODHB] human metagenome; G_DNA_Supragingival plaque
7835
7907
+
Gln
CTG
[ENA]
¢þ
>WENV180736047
ODHB01003751
[ODHB] human metagenome; G_DNA_Supragingival plaque
2718
2790
+
Gln
CTG
[ENA]
¢þ
>WENV180749813
ODHS01000034
[ODHS] human metagenome; G_DNA_Supragingival plaque
18785
18857
+
Gln
CTG
[ENA]
¢þ
>WENV180754880
ODHU01002457
[ODHU] human metagenome; G_DNA_Supragingival plaque
355
283
-
Gln
CTG
[ENA]
¢þ
>WENV180777107
ODIL01000056
[ODIL] human metagenome; G_DNA_Supragingival plaque
37322
37394
+
Gln
CTG
[ENA]
¢þ
>WENV180781881
ODIP01006896
[ODIP] human metagenome; G_DNA_Supragingival plaque
2003
1931
-
Gln
CTG
[ENA]
¢þ
>WENV180787931
ODIS01022051
[ODIS] human metagenome; G_DNA_Supragingival plaque
1139
1211
+
Gln
CTG
[ENA]
¢þ
>WENV180797102
ODJB01029956
[ODJB] human metagenome; G_DNA_Supragingival plaque
200
128
-
Gln
CTG
[ENA]
¢þ
>WENV180801672
ODJD01098588
[ODJD] human metagenome; G_DNA_Supragingival plaque
153
225
+
Gln
CTG
[ENA]
¢þ
>WENV180804830
ODJG01016675
[ODJG] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV180814523
ODJO01021183
[ODJO] human metagenome; G_DNA_Supragingival plaque
1635
1707
+
Gln
CTG
[ENA]
¢þ
>WENV180823055
ODJW01003291
[ODJW] human metagenome; G_DNA_Supragingival plaque
3378
3450
+
Gln
CTG
[ENA]
¢þ
>WENV180824731
ODJX01037757
[ODJX] human metagenome; G_DNA_Supragingival plaque
187
115
-
Gln
CTG
[ENA]
¢þ
>WENV180832876
ODKC01006729
[ODKC] human metagenome; G_DNA_Supragingival plaque
1804
1732
-
Gln
CTG
[ENA]
¢þ
>WENV180834239
ODKD01007311
[ODKD] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV180836236
ODKE01076209
[ODKE] human metagenome; G_DNA_Supragingival plaque
233
305
+
Gln
CTG
[ENA]
¢þ
>WENV180843961
ODKN01021259
[ODKN] human metagenome; G_DNA_Supragingival plaque
368
440
+
Gln
CTG
[ENA]
¢þ
>WENV180847250
ODKT01056257
[ODKT] human metagenome; G_DNA_Supragingival plaque
316
388
+
Gln
CTG
[ENA]
¢þ
>WENV180859413
ODLD01000657
[ODLD] human metagenome; G_DNA_Supragingival plaque
3828
3900
+
Gln
CTG
[ENA]
¢þ
>WENV180889597
ODMN01069781
[ODMN] human metagenome; G_DNA_Supragingival plaque
418
490
+
Gln
CTG
[ENA]
¢þ
>WENV180922259
ODTJ01002167
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4253
4325
+
Gln
CTG
[ENA]
¢þ
>WENV180925223
ODTK01058529
[ODTK] human metagenome; G_DNA_Supragingival plaque
400
472
+
Gln
CTG
[ENA]
¢þ
>WENV180928069
ODTM01012915
[ODTM] human metagenome; G_DNA_Supragingival plaque
920
992
+
Gln
CTG
[ENA]
¢þ
>WENV180933277
ODTR01000008
[ODTR] human metagenome; G_DNA_Supragingival plaque
79058
79130
+
Gln
CTG
[ENA]
¢þ
>WENV180934485
ODTS01000187
[ODTS] human metagenome; G_DNA_Subgingival plaque
15496
15424
-
Gln
CTG
[ENA]
¢þ
>WENV180938708
ODTX01005392
[ODTX] human metagenome; G_DNA_Supragingival plaque
387
459
+
Gln
CTG
[ENA]
¢þ
>WENV180944146
ODUC01008803
[ODUC] human metagenome; G_DNA_Supragingival plaque
3449
3521
+
Gln
CTG
[ENA]
¢þ
>WENV180944984
ODUC01055042
[ODUC] human metagenome; G_DNA_Supragingival plaque
666
594
-
Gln
CTG
[ENA]
¢þ
>WENV180958024
ODUL01000171
[ODUL] human metagenome; G_DNA_Supragingival plaque
1642
1714
+
Gln
CTG
[ENA]
¢þ
>WENV180963983
ODUO01000059
[ODUO] human metagenome; G_DNA_Supragingival plaque
7240
7168
-
Gln
CTG
[ENA]
¢þ
>WENV180973101
ODUW01001214
[ODUW] human metagenome; G_DNA_Supragingival plaque
5606
5534
-
Gln
CTG
[ENA]
¢þ
>WENV180980744
ODVE01001615
[ODVE] human metagenome; G_DNA_Supragingival plaque
4837
4765
-
Gln
CTG
[ENA]
¢þ
>WENV180983051
ODVF01002847
[ODVF] human metagenome; G_DNA_Supragingival plaque
3873
3801
-
Gln
CTG
[ENA]
¢þ
>WENV180987583
ODVK01047052
[ODVK] human metagenome; G_DNA_Supragingival plaque
331
259
-
Gln
CTG
[ENA]
¢þ
>WENV181000081
ODVT01200199
[ODVT] human metagenome; G_DNA_Buccal mucosa
80
8
-
Gln
CTG
[ENA]
¢þ
>WENV181002762
ODVX01001581
[ODVX] human metagenome; G_DNA_Supragingival plaque
3873
3801
-
Gln
CTG
[ENA]
¢þ
>WENV181007948
ODWE01001281
[ODWE] human metagenome; G_DNA_Supragingival plaque
5427
5499
+
Gln
CTG
[ENA]
¢þ
>WENV181012894
ODWK01074973
[ODWK] human metagenome; G_DNA_Supragingival plaque
17
89
+
Gln
CTG
[ENA]
¢þ
>WENV181020059
ODWU01043958
[ODWU] human metagenome; G_DNA_Supragingival plaque
434
506
+
Gln
CTG
[ENA]
¢þ
>WENV181030193
ODXF01067021
[ODXF] human metagenome; G_DNA_Supragingival plaque
214
142
-
Gln
CTG
[ENA]
¢þ
>WENV181049837
ODYD01002595
[ODYD] human metagenome; G_DNA_Supragingival plaque
2
74
+
Gln
CTG
[ENA]
¢þ
>WENV181063559
ODYP01001477
[ODYP] human metagenome; G_DNA_Supragingival plaque
8818
8746
-
Gln
CTG
[ENA]
¢þ
>WENV181067927
ODZI01075892
[ODZI] human metagenome; G_DNA_Supragingival plaque
212
140
-
Gln
CTG
[ENA]
¢þ
>WENV181070819
OEAE01012232
[OEAE] human metagenome; G_DNA_Supragingival plaque
920
992
+
Gln
CTG
[ENA]
¢þ
>WENV181076209
OEAP01002548
[OEAP] human metagenome; G_DNA_Supragingival plaque
4928
4856
-
Gln
CTG
[ENA]
¢þ
>WENV181079948
OEAS01020211
[OEAS] human metagenome; G_DNA_Supragingival plaque
2791
2719
-
Gln
CTG
[ENA]
¢þ
>WENV181082494
OEAV01000016
[OEAV] human metagenome; G_DNA_Supragingival plaque
58265
58337
+
Gln
CTG
[ENA]
¢þ
>WENV181091210
OEBC01017496
[OEBC] human metagenome; G_DNA_Supragingival plaque
353
425
+
Gln
CTG
[ENA]
¢þ
>WENV181107888
OEEI01033719
[OEEI] human metagenome; G_DNA_Supragingival plaque
520
448
-
Gln
CTG
[ENA]
¢þ
>WENV181138055
OEGJ01088695
[OEGJ] human metagenome; G_DNA_Supragingival plaque
278
350
+
Gln
CTG
[ENA]
¢þ
>WENV181144054
OEHM01061160
[OEHM] human metagenome; G_DNA_Supragingival plaque
138
66
-
Gln
CTG
[ENA]
¢þ
>WENV181146107
OEHQ01001045
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5427
5499
+
Gln
CTG
[ENA]
¢þ
>WENV181152901
OEIA01009503
[OEIA] human metagenome; G_DNA_Supragingival plaque
202
130
-
Gln
CTG
[ENA]
¢þ
>WENV181156462
OEIE01018527
[OEIE] human metagenome; G_DNA_Supragingival plaque
963
891
-
Gln
CTG
[ENA]
¢þ
>WENV181159313
OEIH01160820
[OEIH] human metagenome; G_DNA_Supragingival plaque
75
147
+
Gln
CTG
[ENA]
¢þ
>WENV181160716
OEIK01027369
[OEIK] human metagenome; G_DNA_Supragingival plaque
198
126
-
Gln
CTG
[ENA]
¢þ
>WENV181177395
OEJS01001415
[OEJS] human metagenome; G_DNA_Supragingival plaque
6982
7054
+
Gln
CTG
[ENA]
¢þ
>WENV181178847
OEJT01000381
[OEJT] human metagenome; G_DNA_Supragingival plaque
3831
3903
+
Gln
CTG
[ENA]
¢þ
>WENV181181637
OEJV01000032
[OEJV] human metagenome; G_DNA_Supragingival plaque
10180
10252
+
Gln
CTG
[ENA]
¢þ
>WENV183508648
OMHE01008529
[OMHE] human oral metagenome; human oral
116
44
-
Gln
CTG
[ENA]
¢þ
>WENV183711372
PDWI01068192
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2714
2786
+
Gln
CTG
[ENA]
¢þ
>WENV183717705
PDWJ01001424
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
632
704
+
Gln
CTG
[ENA]
¢þ
>C181232170
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
2743414
2743342
-
Gln
CTG
-
¡û
>C191173824
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1463146
1463218
+
Gln
CTG
-
¡û
>C191210839
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1458095
1458167
+
Gln
CTG
-
¡û
>C191214554
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1453508
1453580
+
Gln
CTG
-
¡û
>W141557409
JHVD01000001
Actinomycetota
Propionibacteriaceae bacterium P6A17 [JHVD]
173639
173711
+
Gln
CTG
[ENA]
¡û
>C121002931
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1475485
1475557
+
Gln
CTG
[Ensembl]
¡û
>W1610074473
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
734920
734848
-
Gln
CTG
[ENA]
¡û
>W1710071591
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
734920
734848
-
Gln
CTG
[ENA]
¡û
>W1710521711
FNGP01000003
Actinomycetota
Tessaracoccus oleiagri [FNGP]
442602
442674
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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