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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345452 (34 seq.)
>W1710882227
LMTR01000026
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
43432
43506
+
Val
GAC
[ENA]
¡û
>W131184863
ARTG01000012
Alphaproteobacteria
Hyphomicrobium zavarzinii ATCC 27496 [ARTG]
597886
597960
+
Val
GAC
[ENA]
¡û
>WENV181167146
OEIU01010447
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2090
2016
-
Val
GAC
[ENA]
¢þ
>WENV181169222
OEIV010000744
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6778
6704
-
Val
GAC
[ENA]
¢þ
>WENV181223198
OFDC01002968
[OFDC] hot springs metagenome; Water
5225
5151
-
Val
GAC
[ENA]
¢þ
>WENV181226792
OFDN01000074
[OFDN] hot springs metagenome; Water
10180
10254
+
Val
GAC
[ENA]
¢þ
>W141278379
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
1369599
1369673
+
Val
GAC
[ENA]
¡û
>WENV183724256
PJQE01003795
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1026
1100
+
Val
GAC
[ENA]
¢þ
>WENV170000218
AERA01026994
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14984
14910
-
Val
GAC
[ENA]
¢þ
>WENV170552708
CXWK01001172
[CXWK] wastewater metagenome; activated sludge
124608
124682
+
Val
GAC
[ENA]
¢þ
>WENV170553606
CXWK01025226
[CXWK] wastewater metagenome; activated sludge
3399
3325
-
Val
GAC
[ENA]
¢þ
>WENV170649416
JRYC01006666
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
3850
3776
-
Val
GAC
[ENA]
¢þ
>WENV170649494
JRYC01012097
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
4575
4501
-
Val
GAC
[ENA]
¢þ
>WENV170649573
JRYC01025553
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
562
488
-
Val
GAC
[ENA]
¢þ
>WENV170650728
JRYE01013886
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2819
2893
+
Val
GAC
[ENA]
¢þ
>WENV170650741
JRYE01014745
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
237
311
+
Val
GAC
[ENA]
¢þ
>WENV170652193
JRYH01000027
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
54166
54092
-
Val
GAC
[ENA]
¢þ
>WENV170652204
JRYH01000079
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
91275
91201
-
Val
GAC
[ENA]
¢þ
>WENV170652405
JRYH01002209
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
9516
9590
+
Val
GAC
[ENA]
¢þ
>WENV170652653
JRYH01011267
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1986
2060
+
Val
GAC
[ENA]
¢þ
>WENV170655260
JTFN01015529
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
520
446
-
Val
GAC
[ENA]
¢þ
>WENV170700930
LJSS01012741
[LJSS] hot springs metagenome; water from Lobios Hot Spring
170
96
-
Val
GAC
[ENA]
¢þ
>W09135194
ACVL01000002
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
200098
200172
+
Val
GAC
[ENA]
¡û
>W1910236486
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
2329985
2330059
+
Val
GAC
[ENA]
¡û
>C151104283
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
2251037
2251111
+
Val
GAC
[Ensembl]
¡û
>C151104329
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
2251032
2251106
+
Val
GAC
[Ensembl]
¡û
>W1510072656
CDHO01000003
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
1608362
1608436
+
Val
GAC
[ENA]
¡û
>C10107550
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
2710708
2710634
-
Val
GAC
[Ensembl]
¡û
>WENV11100576
AERA01026994
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14984
14910
-
Val
GAC
[ENA]
¡û
>C11111365
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
742391
742465
+
Val
GAC
[Ensembl]
¡û
>W11181083
AGIS01000001
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
772194
772268
+
Val
GAC
[ENA]
¡û
>C131015823
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
2825628
2825554
-
Val
GAC
[Ensembl]
¡û
>W1610744153
LMTR01000026
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
43432
43506
+
Val
GAC
[ENA]
¡û
>W1710524916
FNJC01000001
Alphaproteobacteria
Filomicrobium insigne [FNJC]
30911
30837
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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