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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.346067 (62 seq.)
>W131158430
AQUB01000011
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
11443
11369
-
Val
TAC
[ENA]
¡û
>W131162562
AQYZ01000002
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
50437
50363
-
Val
TAC
[ENA]
¡û
>W131162924
AQZI01000001
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
133520
133594
+
Val
TAC
[ENA]
¡û
>WENV180102866
OAOZ01037190
[OAOZ] marine metagenome; ENVO:00002010
173
99
-
Val
TAC
[ENA]
¢þ
>WENV180110550
OAPN01000566
[OAPN] marine metagenome; 2011
78
4
-
Val
TAC
[ENA]
¢þ
>WENV180110914
OAPN01013521
[OAPN] marine metagenome; 2011
377
449
+
Val
TAC
[ENA]
¢þ
>WENV180357315
OBNN01001821
[OBNN] marine metagenome; Coastal water
988
1062
+
Val
TAC
[ENA]
¢þ
>WENV180357677
OBNN01062526
[OBNN] marine metagenome; Coastal water
386
314
-
Val
TAC
[ENA]
¢þ
>WENV180377077
OBON01000197
[OBON] marine metagenome; sea water
5065
4991
-
Val
TAC
[ENA]
¢þ
>WENV181367427
OFQB01000983
[OFQB] freshwater metagenome; Freshwater Lake
799
725
-
Val
TAC
[ENA]
¢þ
>WENV181367748
OFQC01009457
[OFQC] freshwater metagenome; Freshwater Lake
300
372
+
Val
TAC
[ENA]
¢þ
>WENV181368356
OFQL01001181
[OFQL] freshwater metagenome; Freshwater Lake
1238
1164
-
Val
TAC
[ENA]
¢þ
>WENV181368875
OFQN01002411
[OFQN] freshwater metagenome; Freshwater Lake
985
1057
+
Val
TAC
[ENA]
¢þ
>WENV181369372
OFQP01000879
[OFQP] freshwater metagenome; Freshwater Lake
3427
3501
+
Val
TAC
[ENA]
¢þ
>WENV181369929
OFQR01002555
[OFQR] freshwater metagenome; Freshwater Lake
1187
1259
+
Val
TAC
[ENA]
¢þ
>WENV181370280
OFQS01001964
[OFQS] freshwater metagenome; Freshwater Lake
890
818
-
Val
TAC
[ENA]
¢þ
>WENV181370321
OFQS01003523
[OFQS] freshwater metagenome; Freshwater Lake
382
456
+
Val
TAC
[ENA]
¢þ
>WENV181370604
OFQT01000628
[OFQT] freshwater metagenome; Freshwater Lake
775
703
-
Val
TAC
[ENA]
¢þ
>WENV181377181
OFRA01003635
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1619
1545
-
Val
TAC
[ENA]
¢þ
>WENV181377373
OFRA01008030
[OFRA] wastewater metagenome; Lake Maggiore Verbania
600
672
+
Val
TAC
[ENA]
¢þ
>WENV181377571
OFRA01018570
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2
76
+
Val
TAC
[ENA]
¢þ
>WENV181379408
OFRD01001220
[OFRD] wastewater metagenome; Exp Tend CN 100WW
394
468
+
Val
TAC
[ENA]
¢þ
>WENV181384981
OFRI01024292
[OFRI] wastewater metagenome; Exp Tend VB 90WW
296
222
-
Val
TAC
[ENA]
¢þ
>WENV181386139
OFRL01000850
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
267
341
+
Val
TAC
[ENA]
¢þ
>WENV181387232
OFRL01066046
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
280
352
+
Val
TAC
[ENA]
¢þ
>WENV181395800
OFSB01004907
[OFSB] freshwater metagenome; Freshwater Lake
429
355
-
Val
TAC
[ENA]
¢þ
>WENV181400021
OFSF01000813
[OFSF] wastewater metagenome; Exp Tend VB 100WW
8575
8501
-
Val
TAC
[ENA]
¢þ
>WENV181400728
OFSF01021009
[OFSF] wastewater metagenome; Exp Tend VB 100WW
75
1
-
Val
TAC
[ENA]
¢þ
>WENV181838217
OGVM01022304
[OGVM] freshwater metagenome; freshwater
21
93
+
Val
TAC
[ENA]
¢þ
>WENV181838914
OGVN01032870
[OGVN] freshwater metagenome; freshwater
41
113
+
Val
TAC
[ENA]
¢þ
>WENV181838967
OGVN01043427
[OGVN] freshwater metagenome; freshwater
600
528
-
Val
TAC
[ENA]
¢þ
>WENV181843279
OGVU01006341
[OGVU] freshwater metagenome; freshwater
903
831
-
Val
TAC
[ENA]
¢þ
>WENV181843308
OGVU01007996
[OGVU] freshwater metagenome; freshwater
573
645
+
Val
TAC
[ENA]
¢þ
>WENV181851153
OGWE01010848
[OGWE] freshwater metagenome; freshwater
287
361
+
Val
TAC
[ENA]
¢þ
>WENV183682085
ORMF010395694
[ORMF] groundwater metagenome; groundwater
879
807
-
Val
TAC
[ENA]
¢þ
>WENV170572628
FLOH01001047
[FLOH] marine metagenome; water
28803
28877
+
Val
TAC
[ENA]
¢þ
>WENV170604160
FUWD010370673
[FUWD] metagenome; unknown
217
291
+
Val
TAC
[ENA]
¢þ
>WENV170620256
FUWD013028214
[FUWD] metagenome; unknown
272
344
+
Val
TAC
[ENA]
¢þ
>WENV170625710
FUWD013203928
[FUWD] metagenome; unknown
806
734
-
Val
TAC
[ENA]
¢þ
>WENV170628389
FUWD013245938
[FUWD] metagenome; unknown
272
344
+
Val
TAC
[ENA]
¢þ
>WENV170633932
FUWD013405899
[FUWD] metagenome; unknown
806
734
-
Val
TAC
[ENA]
¢þ
>WENV170645539
JNSK01000087
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
2871
2797
-
Val
TAC
[ENA]
¢þ
>C181018694
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
1396852
1396778
-
Val
TAC
-
¡û
>C181018737
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1440944
1440870
-
Val
TAC
-
¡û
>C181020837
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
317797
317869
+
Val
TAC
-
¡û
>C181021098
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
324530
324604
+
Val
TAC
-
¡û
>C181021245
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
294008
294080
+
Val
TAC
-
¡û
>C181021331
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
1078257
1078183
-
Val
TAC
-
¡û
>C181021358
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
293659
293731
+
Val
TAC
-
¡û
>WENV022081
AACY020620649
Marine microbial communities from Global Ocean Sampling (GOS)
742
816
+
Val
TAC
[ENA]
>WENV031385
AACY021361920
Marine microbial communities from Global Ocean Sampling (GOS)
665
739
+
Val
TAC
[ENA]
>WENV057206
AACY023288373
Marine microbial communities from Global Ocean Sampling (GOS)
430
504
+
Val
TAC
[ENA]
>WENV057749
AACY023305428
Marine microbial communities from Global Ocean Sampling (GOS)
789
863
+
Val
TAC
[ENA]
>WENV057751
AACY023305541
Marine microbial communities from Global Ocean Sampling (GOS)
438
512
+
Val
TAC
[ENA]
>WENV057929
AACY023311773
Marine microbial communities from Global Ocean Sampling (GOS)
955
1029
+
Val
TAC
[ENA]
>WENV058147
AACY023319143
Marine microbial communities from Global Ocean Sampling (GOS)
1283
1357
+
Val
TAC
[ENA]
>WENV058634
AACY023336450
Marine microbial communities from Global Ocean Sampling (GOS)
1087
1161
+
Val
TAC
[ENA]
>WENV058875
AACY023345399
Marine microbial communities from Global Ocean Sampling (GOS)
459
385
-
Val
TAC
[ENA]
>W1610625356
LIAM01000053
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
5201
5273
+
Val
TAC
[ENA]
¡û
>W1610625374
LIAN01000074
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
294
366
+
Val
TAC
[ENA]
¡û
>W1710756483
LIAM01000053
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
5201
5273
+
Val
TAC
[ENA]
¡û
>W1710756501
LIAN01000074
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
294
366
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK