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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350782 (31 seq.)
>WENV180421968
OBVS01000026
[OBVS] human gut metagenome; faeces
71915
71841
-
Gly
GCC
[ENA]
¢þ
>W141063506
APJA01000004
Bacillota
Clostridium intestinale URNW [APJA]
26634
26708
+
Gly
GCC
[ENA]
¡û
>WENV181806023
OGSJ01005705
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
168
242
+
Gly
GCC
[ENA]
¢þ
>WENV182963293
OKWQ01000060
[OKWQ] human gut metagenome; stool
50717
50643
-
Gly
GCC
[ENA]
¢þ
>WENV170563440
CZCB01018115
[CZCB] anaerobic digester metagenome; anaerobic digester
2965
2894
-
Gly
GCC
[ENA]
¢þ
>C191123806
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
880445
880519
+
Gly
GCC
-
¡û
>C191184250
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
1612355
1612429
+
Gly
GCC
-
¡û
>C191184293
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944268
2944194
-
Gly
GCC
-
¡û
>C191184304
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943272
2943198
-
Gly
GCC
-
¡û
>C191184315
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
578934
578860
-
Gly
GCC
-
¡û
>W1810604942
QGMU01000017
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
12123
12049
-
Gly
GCC
[ENA]
¡û
>W1510060452
CCXI01000070
Bacillota
Clostridium polynesiense MS1 [CCXI]
57257
57183
-
Gly
GCC
[ENA]
¡û
>W1510060461
CCXI01000089
Bacillota
Clostridium polynesiense MS1 [CCXI]
6185
6111
-
Gly
GCC
[ENA]
¡û
>W1510755136
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871773
871847
+
Gly
GCC
[ENA]
¡û
>W1510755144
CYSK01000014
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
548334
548408
+
Gly
GCC
[ENA]
¡û
>W1511595444
LBMX01000012
Bacillota
Clostridium sp. C8 [LBMX]
42308
42382
+
Gly
GCC
[ENA]
¡û
>W1610061710
BCMV01000016
Bacillota
Sarcina ventriculi [BCMV]
63529
63603
+
Gly
GCC
[ENA]
¡û
>W1610061719
BCMV01000024
Bacillota
Sarcina ventriculi [BCMV]
2271
2345
+
Gly
GCC
[ENA]
¡û
>W1610061735
BCMV01000091
Bacillota
Sarcina ventriculi [BCMV]
80
6
-
Gly
GCC
[ENA]
¡û
>W1610507774
FLTT01000073
Bacillota
Clostridium septicum [FLTT]
3569
3643
+
Gly
GCC
[ENA]
¡û
>W1710059375
BCMV01000016
Bacillota
Sarcina ventriculi [BCMV]
63529
63603
+
Gly
GCC
[ENA]
¡û
>W1710059384
BCMV01000024
Bacillota
Sarcina ventriculi [BCMV]
2271
2345
+
Gly
GCC
[ENA]
¡û
>W1710059400
BCMV01000091
Bacillota
Sarcina ventriculi [BCMV]
80
6
-
Gly
GCC
[ENA]
¡û
>W1710499992
FLTT01000073
Bacillota
Clostridium septicum [FLTT]
3569
3643
+
Gly
GCC
[ENA]
¡û
>W1710584328
FQVM01000003
Bacillota
Clostridium fallax [FQVM]
154474
154548
+
Gly
GCC
[ENA]
¡û
>W1710584356
FQVM01000013
Bacillota
Clostridium fallax [FQVM]
23078
23152
+
Gly
GCC
[ENA]
¡û
>W1710584379
FQVM01000033
Bacillota
Clostridium fallax [FQVM]
1326
1252
-
Gly
GCC
[ENA]
¡û
>W1710584390
FQVM01000033
Bacillota
Clostridium fallax [FQVM]
338
264
-
Gly
GCC
[ENA]
¡û
>W1710588055
FQZB01000009
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
260144
260070
-
Gly
GCC
[ENA]
¡û
>W1710588058
FQZB01000010
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
146419
146345
-
Gly
GCC
[ENA]
¡û
>W1710602357
FUYD01000006
Bacillota
Clostridium sp. USBA 49 [FUYD]
12893
12819
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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