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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3525 (21 seq.)
>W1711629627
MPPE01000028
Bacillota
Tepidanaerobacter sp. EBM-49 [MPPE]
47300
47394
+
Ser
GCT
[ENA]
¡û
>W131237144
AUMW01000011
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
133155
133061
-
Ser
GCT
[ENA]
¡û
>WENV170561047
CZCA01002509
[CZCA] anaerobic digester metagenome; anaerobic digester
5990
5896
-
Ser
GCT
[ENA]
¢þ
>WENV170563107
CZCB01010105
[CZCB] anaerobic digester metagenome; anaerobic digester
2159
2253
+
Ser
GCT
[ENA]
¢þ
>WENV170563220
CZCB01012168
[CZCB] anaerobic digester metagenome; anaerobic digester
2169
2263
+
Ser
GCT
[ENA]
¢þ
>WENV170685705
LFRM01105041
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10259
10353
+
Ser
GCT
[ENA]
¢þ
>C181166311
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1472837
1472931
+
Ser
GCT
-
¡û
>C181166352
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2162777
2162683
-
Ser
GCT
-
¡û
>C181166385
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1495729
1495823
+
Ser
GCT
-
¡û
>C181166426
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2205425
2205331
-
Ser
GCT
-
¡û
>W141817201
JQKL01000061
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
15295
15389
+
Ser
GCT
[ENA]
¡û
>C10111803
CP002048
Bacillota
Syntrophothermus lipocalidus DSM 12680 [CP002048]
14902
14996
+
Ser
GCT
[Ensembl]
¡û
>W1511570787
LAKY01000064
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
13547
13453
-
Ser
GCT
[ENA]
¡û
>W1710083543
BDJK01000009
Bacillota
Carboxydothermus pertinax [BDJK]
42480
42574
+
Ser
GCT
[ENA]
¡û
>W1710084326
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
1449
1355
-
Ser
GCT
[ENA]
¡û
>W1710084333
BDLQ01000021
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
17506
17600
+
Ser
GCT
[ENA]
¡û
>W1710084409
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
1440
1346
-
Ser
GCT
[ENA]
¡û
>W1710084435
BDLR01000181
Bacillota
Carboxydocella sp. JDF658 [BDLR]
17398
17492
+
Ser
GCT
[ENA]
¡û
>W1710574818
FOYM01000041
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
13573
13479
-
Ser
GCT
[ENA]
¡û
>W1710601653
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
85727
85633
-
Ser
GCT
[ENA]
¡û
>W1710601672
FUXM01000045
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
255
349
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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