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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353290 (44 seq.)
>W1711078556
LSMZ01000062
Bacillota
Clostridium sp. link-BC1 [LSMZ]
133345
133271
-
Gly
GCC
[ENA]
¡û
>W1711078564
LSMZ01000071
Bacillota
Clostridium sp. link-BC1 [LSMZ]
20096
20022
-
Gly
GCC
[ENA]
¡û
>W1711222554
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2482240
2482166
-
Gly
GCC
[ENA]
¡û
>W1711222556
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1737100
1737026
-
Gly
GCC
[ENA]
¡û
>W131098546
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
36862
36788
-
Gly
GCC
[ENA]
¡û
>W131098560
AORV01000065
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
397817
397743
-
Gly
GCC
[ENA]
¡û
>W1711903056
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
117821
117747
-
Gly
GCC
[ENA]
¡û
>W1711903062
MZGX01000013
Bacillota
Ruminiclostridium hungatei [MZGX]
26728
26654
-
Gly
GCC
[ENA]
¡û
>W131204243
ATAY01000094
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
136845
136771
-
Gly
GCC
[ENA]
¡û
>W131204209
ATAY01000022
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
15519
15445
-
Gly
GCC
[ENA]
¡û
>w020767
AAVC01000092
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
214
288
+
Gly
GCC
[ENA]
¡û
>w020721
AAVC01000001
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
102217
102291
+
Gly
GCC
[ENA]
¡û
>WENV180298024
OBJA01142998
[OBJA] soil metagenome; sediment, water from around vicinity
46
120
+
Gly
GCC
[ENA]
¢þ
>W141067357
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1205967
1206041
+
Gly
GCC
[ENA]
¡û
>W141067367
ASAA01000010
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
290474
290548
+
Gly
GCC
[ENA]
¡û
>WENV181230744
OFEK01002853
[OFEK] activated sludge metagenome; Anaerobic digester
8348
8274
-
Gly
GCC
[ENA]
¢þ
>WENV170685860
LFRM01112816
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
104
178
+
Gly
GCC
[ENA]
¢þ
>W141561052
JHYD01000001
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
54810
54884
+
Gly
GCC
[ENA]
¡û
>W141561085
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
104514
104588
+
Gly
GCC
[ENA]
¡û
>W141816718
JQKC01000002
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
270764
270838
+
Gly
GCC
[ENA]
¡û
>W141816740
JQKC01000019
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
72816
72744
-
Gly
GCC
[ENA]
¡û
>C09103090
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3455941
3455867
-
Gly
GCC
[Ensembl]
¡û
>W1910927537
NIOI01000004
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
85764
85838
+
Gly
GCC
[ENA]
¡û
>W1910927570
NIOJ01000029
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
23882
23808
-
Gly
GCC
[ENA]
¡û
>W1810677417
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56321
56247
-
Gly
GCC
[ENA]
¡û
>W1810677440
QKMR01000021
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
21052
21126
+
Gly
GCC
[ENA]
¡û
>W10105881
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
29657
29583
-
Gly
GCC
[ENA]
¡û
>W10105902
ACXX01000051
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
15268
15194
-
Gly
GCC
[ENA]
¡û
>W10126169
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29314
29240
-
Gly
GCC
[ENA]
¡û
>W10126180
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
18135
18209
+
Gly
GCC
[ENA]
¡û
>W11108179
ACXX02000001
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
583110
583184
+
Gly
GCC
[ENA]
¡û
>W11108225
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
108261
108335
+
Gly
GCC
[ENA]
¡û
>W11133430
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29314
29240
-
Gly
GCC
[ENA]
¡û
>W11133441
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
18135
18209
+
Gly
GCC
[ENA]
¡û
>W1511706064
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
4553837
4553763
-
Gly
GCC
[ENA]
¡û
>W1511706069
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
3085854
3085782
-
Gly
GCC
[ENA]
¡û
>C121005034
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
581658
581732
+
Gly
GCC
[Ensembl]
¡û
>C121005036
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1322941
1323015
+
Gly
GCC
[Ensembl]
¡û
>C121009857
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138113
4138039
-
Gly
GCC
[Ensembl]
¡û
>C121009859
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
3120579
3120505
-
Gly
GCC
[Ensembl]
¡û
>W1610043737
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49544
49618
+
Gly
GCC
[ENA]
¡û
>W1610043740
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
267
193
-
Gly
GCC
[ENA]
¡û
>W1710040897
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49544
49618
+
Gly
GCC
[ENA]
¡û
>W1710040900
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
267
193
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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