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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359107 (29 seq.)
>W1711621537
MPDF01000017
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
35787
35713
-
Gln
TTG
[ENA]
¡û
>W1711621539
MPDF01000017
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
35546
35472
-
Gln
TTG
[ENA]
¡û
>w014277
AAOH01000014
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
431
355
-
Gln
TTG
[ENA]
¡û
>w014253
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404060
403984
-
Gln
TTG
[ENA]
¡û
>w014251
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404300
404224
-
Gln
TTG
[ENA]
¡û
>w014248
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
404716
404640
-
Gln
TTG
[ENA]
¡û
>WENV182545148
OJBM01000294
[OJBM] seawater metagenome; Sea water
6446
6520
+
Gln
TTG
[ENA]
¢þ
>WENV170783677
MAAC01018369
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7272
7346
+
Gln
TTG
[ENA]
¢þ
>WENV170783678
MAAC01018369
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7406
7480
+
Gln
TTG
[ENA]
¢þ
>C181010506
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1359402
1359328
-
Gln
TTG
-
¡û
>C181010508
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1359187
1359113
-
Gln
TTG
-
¡û
>C181010511
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1358771
1358697
-
Gln
TTG
-
¡û
>C181010513
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1358531
1358457
-
Gln
TTG
-
¡û
>C191083397
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
657224
657150
-
Gln
TTG
-
¡û
>C191083399
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
657009
656935
-
Gln
TTG
-
¡û
>C191083402
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
656593
656519
-
Gln
TTG
-
¡û
>C191083404
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
656353
656279
-
Gln
TTG
-
¡û
>W1810154334
PIZK01000020
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
80007
79933
-
Gln
TTG
[ENA]
¡û
>W1810154336
PIZK01000020
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
79757
79683
-
Gln
TTG
[ENA]
¡û
>W1810154339
PIZK01000020
Gammaproteobacteria
Alteromonadales bacterium alter-6D02 [PIZK]
79404
79330
-
Gln
TTG
[ENA]
¡û
>W1511322681
JQDZ01000009
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
116350
116424
+
Gln
TTG
[ENA]
¡û
>W1511322682
JQDZ01000009
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
116491
116565
+
Gln
TTG
[ENA]
¡û
>W1511533724
JYNI01000004
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
26474
26548
+
Gln
TTG
[ENA]
¡û
>W1511533726
JYNI01000004
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
26741
26815
+
Gln
TTG
[ENA]
¡û
>W1511533729
JYNI01000004
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
27159
27233
+
Gln
TTG
[ENA]
¡û
>W1511533820
JYNJ01000066
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
16317
16243
-
Gln
TTG
[ENA]
¡û
>W1511533822
JYNJ01000066
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
16057
15983
-
Gln
TTG
[ENA]
¡û
>W1710553223
FOHK01000009
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
34540
34614
+
Gln
TTG
[ENA]
¡û
>W1710553224
FOHK01000009
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
34659
34733
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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