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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360086 (29 seq.)
>W1711713027
MTCR01000057
Bacteroidota
Sphingobacteriales bacterium TSM_CSM [MTCR]
24891
24817
-
Glu
TTC
[ENA]
¡û
>W1711945939
NBMY01000145
Bacteroidota
Sphingobacteriales bacterium TSM_CSS [NBMY]
17739
17813
+
Glu
TTC
[ENA]
¡û
>WENV181170565
OEIV010059116
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
611
683
+
Glu
TTC
[ENA]
¢þ
>WENV181222738
OFDC01000151
[OFDC] hot springs metagenome; Water
27882
27810
-
Glu
TTC
[ENA]
¢þ
>WENV181226903
OFDN01000353
[OFDN] hot springs metagenome; Water
1118
1046
-
Glu
TTC
[ENA]
¢þ
>WENV181841404
OGVR01023984
[OGVR] freshwater metagenome; freshwater
325
253
-
Glu
TTC
[ENA]
¢þ
>WENV183727571
PJTP01000020
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
245100
245028
-
Glu
TTC
[ENA]
¢þ
>WENV183727572
PJTP01000020
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
218021
217949
-
Glu
TTC
[ENA]
¢þ
>WENV183727725
PJTP01000104
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
52429
52357
-
Glu
TTC
[ENA]
¢þ
>WENV183727967
PJTP01010537
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
18
90
+
Glu
TTC
[ENA]
¢þ
>WENV170654053
JRYK01005355
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
17629
17555
-
Glu
TTC
[ENA]
¢þ
>C181063959
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
119955
119883
-
Glu
TTC
-
¡û
>C181063960
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
119835
119763
-
Glu
TTC
-
¡û
>C191157531
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
3937763
3937835
+
Glu
TTC
-
¡û
>C191157562
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
210143
210071
-
Glu
TTC
-
¡û
>W1911136236
NOUX01000011
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
175
103
-
Glu
TTC
[ENA]
¡û
>W1911136237
NOUX01000012
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
48636
48564
-
Glu
TTC
[ENA]
¡û
>W1810389979
PXYE01000073
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
24891
24819
-
Glu
TTC
[ENA]
¡û
>W1810389987
PXYE01000106
Bacteroidota
Sphingobacteriales bacterium UPWRP_1 [PXYE]
17739
17811
+
Glu
TTC
[ENA]
¡û
>W1810405006
PYLS01000004
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
465088
465160
+
Glu
TTC
[ENA]
¡û
>W1510076407
CDOK01000025
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
156
230
+
Glu
TTC
[ENA]
¡û
>C11105000
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1007004
1006932
-
Glu
TTC
[Ensembl]
¡û
>C11105001
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1006884
1006810
-
Glu
TTC
[Ensembl]
¡û
>W1511590259
LBGU01000027
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
61742
61816
+
Glu
TTC
[ENA]
¡û
>W1511590260
LBGU01000027
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
88865
88937
+
Glu
TTC
[ENA]
¡û
>W1511590268
LBGU01000032
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
69829
69755
-
Glu
TTC
[ENA]
¡û
>W1710543108
FNZR01000001
Bacteroidota
Parapedobacter koreensis [FNZR]
345352
345424
+
Glu
TTC
[ENA]
¡û
>W1710576373
FOZZ01000003
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
185886
185960
+
Glu
TTC
[ENA]
¡û
>W1710576376
FOZZ01000004
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
286314
286386
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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