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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363133 (43 seq.)
>W131235283
AULL01000012
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
443379
443451
+
Thr
GGT
[ENA]
¡û
>W1711385044
MEDR01000029
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
75075
75149
+
Thr
GGT
[ENA]
¡û
>W1711503231
MKTK01000011
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
6619
6691
+
Thr
GGT
[ENA]
¡û
>WENV180593001
OCOW01178630
[OCOW] marine metagenome; Sterivex cartridges
332
260
-
Thr
GGT
[ENA]
¢þ
>WENV181309504
OFIW01002272
[OFIW] marine metagenome; seawater
22
94
+
Thr
GGT
[ENA]
¢þ
>WENV181313774
OFJH01005166
[OFJH] marine metagenome; seawater
203
131
-
Thr
GGT
[ENA]
¢þ
>WENV181320720
OFKI01010569
[OFKI] marine metagenome; seawater
590
518
-
Thr
GGT
[ENA]
¢þ
>WENV182555200
OJCY01009681
[OJCY] seawater metagenome; Sea water
971
897
-
Thr
GGT
[ENA]
¢þ
>WENV182564953
OJEF01019797
[OJEF] seawater metagenome; Sea water
982
910
-
Thr
GGT
[ENA]
¢þ
>WENV182565653
OJEH01021596
[OJEH] seawater metagenome; Sea water
643
715
+
Thr
GGT
[ENA]
¢þ
>WENV182573991
OJFQ01007307
[OJFQ] seawater metagenome; Sea water
567
639
+
Thr
GGT
[ENA]
¢þ
>WENV182586303
OJHK01000043
[OJHK] seawater metagenome; Sea water
94216
94290
+
Thr
GGT
[ENA]
¢þ
>WENV170116612
CENG01180426
[CENG] marine metagenome genome assembly TARA_007_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
118
192
+
Thr
GGT
[ENA]
¢þ
>WENV170117690
CENJ01024060
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
120
194
+
Thr
GGT
[ENA]
¢þ
>WENV170161515
CEOK01343541
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
927
853
-
Thr
GGT
[ENA]
¢þ
>WENV170619032
FUWD012996477
[FUWD] metagenome; unknown
137
63
-
Thr
GGT
[ENA]
¢þ
>WENV170782751
MAAC01011209
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
66234
66162
-
Thr
GGT
[ENA]
¢þ
>WENV170782838
MAAC01011315
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
71725
71653
-
Thr
GGT
[ENA]
¢þ
>WENV170782847
MAAC01011319
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3951
3879
-
Thr
GGT
[ENA]
¢þ
>WENV170949328
MEHZ011402058
[MEHZ] marine metagenome; marine surface water
440
366
-
Thr
GGT
[ENA]
¢þ
>WENV170949367
MEHZ011407463
[MEHZ] marine metagenome; marine surface water
6385
6311
-
Thr
GGT
[ENA]
¢þ
>WENV170951417
MEHZ011552109
[MEHZ] marine metagenome; marine surface water
381
307
-
Thr
GGT
[ENA]
¢þ
>WENV170952158
MEHZ011586108
[MEHZ] marine metagenome; marine surface water
8138
8210
+
Thr
GGT
[ENA]
¢þ
>C181113305
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
390988
390916
-
Thr
GGT
-
¡û
>C181225825
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
1278315
1278243
-
Thr
GGT
-
¡û
>C191120438
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
647884
647812
-
Thr
GGT
-
¡û
>C191120465
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2822429
2822501
+
Thr
GGT
-
¡û
>C191120891
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
434741
434813
+
Thr
GGT
-
¡û
>C191120946
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
2374059
2373987
-
Thr
GGT
-
¡û
>C191212985
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2681827
2681899
+
Thr
GGT
-
¡û
>W141812198
JPZT01000004
Bacteroidota
Altibacter lentus [JPZT]
1115957
1115883
-
Thr
GGT
[ENA]
¡û
>W1810735850
QOLC01000106
Bacteroidota
Candidatus Ulvibacter alkanivorans Bin25-node4 [QOLC]
4256
4184
-
Thr
GGT
[ENA]
¡û
>W1810758151
QPIE01000002
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
250051
250123
+
Thr
GGT
[ENA]
¡û
>W1511320938
JQCT01000020
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
16310
16236
-
Thr
GGT
[ENA]
¡û
>W1511390848
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
66898
66972
+
Thr
GGT
[ENA]
¡û
>W1511390900
JSYL01000010
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
20154
20082
-
Thr
GGT
[ENA]
¡û
>C161000298
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1556098
1556170
+
Thr
GGT
[Ensembl]
¡û
>C161027975
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
191299
191371
+
Thr
GGT
[Ensembl]
¡û
>W1610626525
LICI01000067
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
1551
1479
-
Thr
GGT
[ENA]
¡û
>W1710514697
FNBD01000013
Bacteroidota
Cellulophaga baltica [FNBD]
89730
89804
+
Thr
GGT
[ENA]
¡û
>W1710557460
FOLA01000012
Bacteroidota
Kaistella jeonii [FOLA]
20080
20008
-
Thr
GGT
[ENA]
¡û
>W1710565958
FORQ01000004
Bacteroidota
Kaistella treverensis treverense [FORQ]
66548
66622
+
Thr
GGT
[ENA]
¡û
>W1710757652
LICI01000067
Bacteroidota
Cryomorphaceae bacterium BACL29 MAG-121220-bin8 [LICI]
1551
1479
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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