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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366499 (87 seq.)
>W1710852542
LLVU01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
28335
28261
-
Thr
GGT
[ENA]
¡û
>W1710869960
LMKD01000001
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
1042821
1042895
+
Thr
GGT
[ENA]
¡û
>W1710871968
LMLQ01000001
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
1079185
1079259
+
Thr
GGT
[ENA]
¡û
>W1710873048
LMMM01000012
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
154871
154945
+
Thr
GGT
[ENA]
¡û
>W1710874912
LMNZ01000004
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
169253
169179
-
Thr
GGT
[ENA]
¡û
>W1710875899
LMOT01000008
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
446248
446174
-
Thr
GGT
[ENA]
¡û
>W1710893523
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
111538
111464
-
Thr
GGT
[ENA]
¡û
>W1710916274
LNUW01000036
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
143219
143293
+
Thr
GGT
[ENA]
¡û
>W1711050802
LRRR01000014
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
42871
42945
+
Thr
GGT
[ENA]
¡û
>W1711135078
LUYN01000033
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
288
214
-
Thr
GGT
[ENA]
¡û
>W1711214014
LXKU01000020
Alphaproteobacteria
Agrobacterium rubi [LXKU]
354480
354554
+
Thr
GGT
[ENA]
¡û
>W1711294772
MABH01000140
Alphaproteobacteria
Cereibacter johrii [MABH]
14001
13927
-
Thr
GGT
[ENA]
¡û
>W1711501829
MKSB01000069
Alphaproteobacteria
Rhizobiales bacterium 63-7 [MKSB]
16932
17006
+
Thr
GGT
[ENA]
¡û
>C171036996
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
2370642
2370716
+
Thr
GGT
-
¡û
>C171067802
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
966563
966489
-
Thr
GGT
-
¡û
>W131058630
ANFS01000003
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
277452
277378
-
Thr
GGT
[ENA]
¡û
>W131222239
AUBC01000007
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
85067
84993
-
Thr
GGT
[ENA]
¡û
>W131225091
AUDH01000010
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
20285
20359
+
Thr
GGT
[ENA]
¡û
>C019221
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
2370733
2370807
+
Thr
GGT
[Ensembl]
¡û
>C019295
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
591774
591700
-
Thr
GGT
[Ensembl]
¡û
>C019312
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
2417575
2417649
+
Thr
GGT
[Ensembl]
¡û
>WENV180231733
OBCO01000001
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
691725
691799
+
Thr
GGT
[ENA]
¢þ
>w001277
AAAE01000158
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
142897
142826
-
Thr
GGT
[ENA]
¡û
>WENV180569463
OCLR01000085
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
86784
86858
+
Thr
GGT
[ENA]
¢þ
>WENV180570338
OCLS01000050
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
151525
151451
-
Thr
GGT
[ENA]
¢þ
>WENV180571090
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
691606
691680
+
Thr
GGT
[ENA]
¢þ
>WENV180573435
OCLW01000016
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
192904
192978
+
Thr
GGT
[ENA]
¢þ
>WENV181411515
OGCI01029409
[OGCI] hot springs metagenome; Hot spring water
1312
1386
+
Thr
GGT
[ENA]
¢þ
>W141237956
BBJU01000010
Alphaproteobacteria
Agrobacterium rubi NBRC 13261 [BBJU]
64151
64225
+
Thr
GGT
[ENA]
¡û
>WENV183735807
PJUB01003362
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
946
872
-
Thr
GGT
[ENA]
¢þ
>WENV183741030
PJUF01029919
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
557
631
+
Thr
GGT
[ENA]
¢þ
>WENV183750400
PPFU01297002
[PPFU] hypolithon metagenome; Antarctic Hypolithon
5992
6066
+
Thr
GGT
[ENA]
¢þ
>WENV170018736
BBPD01000603
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13591
13665
+
Thr
GGT
[ENA]
¢þ
>WENV170018978
BBPD01002727
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10559
10485
-
Thr
GGT
[ENA]
¢þ
>WENV170020036
BBPE01002236
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
8088
8014
-
Thr
GGT
[ENA]
¢þ
>WENV170973331
MTKY01028411
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
746
672
-
Thr
GGT
[ENA]
¢þ
>WENV170974860
MTKY01078175
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2132
2206
+
Thr
GGT
[ENA]
¢þ
>WENV171002995
NKIC01002197
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
140
214
+
Thr
GGT
[ENA]
¢þ
>C181017227
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
2370623
2370697
+
Thr
GGT
-
¡û
>C181191112
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
2370660
2370734
+
Thr
GGT
-
¡û
>C191079673
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
533735
533661
-
Thr
GGT
-
¡û
>C191151013
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
2424970
2425044
+
Thr
GGT
-
¡û
>W1910226219
FMUD01000002
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
113312
113238
-
Thr
GGT
[ENA]
¡û
>W1910226273
FMUE01000003
Alphaproteobacteria
Agrobacterium rosae DSM 25559 [FMUE]
74673
74599
-
Thr
GGT
[ENA]
¡û
>C141001998
CP003789
Alphaproteobacteria
Liberibacter crescens BT-1 [CP003789]
1086000
1086074
+
Thr
GGT
[Ensembl]
¡û
>W1910501734
FYAS01000031
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
14351
14277
-
Thr
GGT
[ENA]
¡û
>W1911422600
NXEJ01000006
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
18223
18149
-
Thr
GGT
[ENA]
¡û
>W1911701547
QNUM01000002
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
568744
568670
-
Thr
GGT
[ENA]
¡û
>W1911749429
QWGP01000001
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
335496
335422
-
Thr
GGT
[ENA]
¡û
>W1911766263
QXDK01000001
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
437617
437543
-
Thr
GGT
[ENA]
¡û
>W1810084205
PEQT01000002
Alphaproteobacteria
Agrobacterium rosae B20.3 [PEQT]
528958
529032
+
Thr
GGT
[ENA]
¡û
>W1810089064
PGEL01000022
Alphaproteobacteria
Agrobacterium bohemicum R90 [PGEL]
143219
143293
+
Thr
GGT
[ENA]
¡û
>W1810268905
PRDS01000008
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
18146
18220
+
Thr
GGT
[ENA]
¡û
>W1810368576
PVZS01000002
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
267775
267701
-
Thr
GGT
[ENA]
¡û
>W1810463830
PZZW01000003
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
185835
185909
+
Thr
GGT
[ENA]
¡û
>W1810537732
QDFK01000003
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFK]
465269
465195
-
Thr
GGT
[ENA]
¡û
>W1810537778
QDFL01000003
Alphaproteobacteria
Agrobacterium tumefaciens TPD7005 [QDFL]
465269
465195
-
Thr
GGT
[ENA]
¡û
>W1810538262
QDFR01000003
Alphaproteobacteria
Rhizobium rhizogenes TPD7009 [QDFR]
465412
465338
-
Thr
GGT
[ENA]
¡û
>W1810605131
QGNA01000002
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
271211
271285
+
Thr
GGT
[ENA]
¡û
>W1810699100
QMCC01000004
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
828836
828762
-
Thr
GGT
[ENA]
¡û
>W1810721642
QNSD01000020
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
64109
64183
+
Thr
GGT
[ENA]
¡û
>W1810725563
QODK01000008
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
134853
134779
-
Thr
GGT
[ENA]
¡û
>C151094762
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
2457805
2457731
-
Thr
GGT
-
¡û
>ENV09003588
ADGO01095903
Compost metagenome contig00001
172
98
-
Thr
GGT
[ENA]
¡û
>W1511569444
LAJY01000265
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
153
227
+
Thr
GGT
[ENA]
¡û
>W1511569445
LAJY01000272
Alphaproteobacteria
Elstera litoralis Dia-1 [LAJY]
158
84
-
Thr
GGT
[ENA]
¡û
>W11160170
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1780045
1780119
+
Thr
GGT
[ENA]
¡û
>C161027940
CP010522
Alphaproteobacteria
Liberibacter crescens BT-0 [CP010522]
1139687
1139761
+
Thr
GGT
-
¡û
>C161048356
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
2370634
2370708
+
Thr
GGT
-
¡û
>W121110787
ALIQ01000123
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
6430
6356
-
Thr
GGT
[ENA]
¡û
>W121102127
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
2370653
2370727
+
Thr
GGT
[ENA]
¡û
>W1610715681
LLVU01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
28335
28261
-
Thr
GGT
[ENA]
¡û
>W1610732306
LMKD01000001
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
1042821
1042895
+
Thr
GGT
[ENA]
¡û
>W1610734314
LMLQ01000001
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
1079185
1079259
+
Thr
GGT
[ENA]
¡û
>W1610735394
LMMM01000012
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
154871
154945
+
Thr
GGT
[ENA]
¡û
>W1610737258
LMNZ01000004
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
169253
169179
-
Thr
GGT
[ENA]
¡û
>W1610738245
LMOT01000008
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
446248
446174
-
Thr
GGT
[ENA]
¡û
>W1610753789
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
111538
111464
-
Thr
GGT
[ENA]
¡û
>W1610774513
LNUW01000036
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
143219
143293
+
Thr
GGT
[ENA]
¡û
>W1610891931
LRRR01000014
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
42871
42945
+
Thr
GGT
[ENA]
¡û
>W1610946198
LUYN01000033
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
288
214
-
Thr
GGT
[ENA]
¡û
>W1611001018
LXKU01000020
Alphaproteobacteria
Agrobacterium rubi [LXKU]
354480
354554
+
Thr
GGT
[ENA]
¡û
>WENV080122
AATO01007174
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
467
541
+
Thr
GGT
[ENA]
>W1710567294
FOSQ01000002
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
554408
554334
-
Thr
GGT
[ENA]
¡û
>W1710571135
FOVR01000002
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
684410
684484
+
Thr
GGT
[ENA]
¡û
>W1710595636
FTMB01000002
Alphaproteobacteria
Rhizobium sp. RU20A [FTMB]
221229
221303
+
Thr
GGT
[ENA]
¡û
>W133001985
AOFG01000001
Alphaproteobacteria
Candidatus Liberibacter americanus americanus PW_SP [AOFG]
4816
4890
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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