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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.369403 (54 seq.)
>C171096303
CP019607
Actinomycetota
Tessaracoccus flavescens SST-39T [CP019607]
3230602
3230528
-
Arg
CCG
-
¡û
>WENV180697985
ODDE01017163
[ODDE] human metagenome; G_DNA_Supragingival plaque
631
703
+
Arg
CCG
[ENA]
¡û
>WENV180733850
ODGZ01001031
[ODGZ] human metagenome; G_DNA_Supragingival plaque
10240
10168
-
Arg
CCG
[ENA]
¡û
>WENV180733981
ODGZ01001752
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4918
4846
-
Arg
CCG
[ENA]
¡û
>WENV180801250
ODJD01016287
[ODJD] human metagenome; G_DNA_Supragingival plaque
760
832
+
Arg
CCG
[ENA]
¡û
>WENV180834039
ODKD01002148
[ODKD] human metagenome; G_DNA_Supragingival plaque
4842
4770
-
Arg
CCG
[ENA]
¡û
>WENV180844186
ODKN01045980
[ODKN] human metagenome; G_DNA_Supragingival plaque
318
390
+
Arg
CCG
[ENA]
¡û
>WENV180922974
ODTJ01024941
[ODTJ] human metagenome; G_DNA_Supragingival plaque
338
266
-
Arg
CCG
[ENA]
¡û
>WENV181020285
ODWU01101159
[ODWU] human metagenome; G_DNA_Supragingival plaque
250
322
+
Arg
CCG
[ENA]
¡û
>WENV181049551
ODYD01000575
[ODYD] human metagenome; G_DNA_Supragingival plaque
5803
5875
+
Arg
CCG
[ENA]
¡û
>WENV181050978
ODYD01121444
[ODYD] human metagenome; G_DNA_Supragingival plaque
75
3
-
Arg
CCG
[ENA]
¡û
>WENV181070616
OEAE01004236
[OEAE] human metagenome; G_DNA_Supragingival plaque
9
81
+
Arg
CCG
[ENA]
¡û
>WENV181078445
OEAS01000070
[OEAS] human metagenome; G_DNA_Supragingival plaque
36165
36093
-
Arg
CCG
[ENA]
¡û
>WENV181146359
OEHQ01003746
[OEHQ] human metagenome; G_DNA_Supragingival plaque
4519
4591
+
Arg
CCG
[ENA]
¡û
>C181119565
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
2566215
2566287
+
Arg
CCG
-
¡û
>W1911076301
NMVK01000002
Actinomycetota
Propionibacteriaceae bacterium NML 150272 [NMVK]
84654
84728
+
Arg
CCG
[ENA]
¡û
>W1911076360
NMVL01000011
Actinomycetota
Propionibacteriaceae bacterium NML 140250 [NMVL]
99039
98965
-
Arg
CCG
[ENA]
¡û
>W1911076437
NMVM01000005
Actinomycetota
Propionibacteriaceae bacterium NML 090529 [NMVM]
183167
183093
-
Arg
CCG
[ENA]
¡û
>W1911076479
NMVN01000016
Actinomycetota
Propionibacteriaceae bacterium NML 061049 [NMVN]
204356
204430
+
Arg
CCG
[ENA]
¡û
>W1911076503
NMVO01000012
Actinomycetota
Propionibacteriaceae bacterium NML 030167 [NMVO]
202343
202417
+
Arg
CCG
[ENA]
¡û
>W1911076562
NMVP01000033
Actinomycetota
Propionibacteriaceae bacterium NML 020265 [NMVP]
197014
197088
+
Arg
CCG
[ENA]
¡û
>W1911076615
NMVQ01000034
Actinomycetota
Propionibacteriaceae bacterium NML 130396 [NMVQ]
129968
130042
+
Arg
CCG
[ENA]
¡û
>W1911575861
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
2544077
2544151
+
Arg
CCG
[ENA]
¡û
>W1911693723
QLVF01000942
Actinomycetota
Aeromicrobium sp. CPCC 204604 [QLVF]
559
487
-
Arg
CCG
[ENA]
¡û
>W1810173583
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
944927
944999
+
Arg
CCG
[ENA]
¡û
>W1810201594
POAG01000023
Actinomycetota
Nocardioides sp. 616 [POAG]
142114
142042
-
Arg
CCG
[ENA]
¡û
>W1810675451
QKKY01000942
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
559
487
-
Arg
CCG
[ENA]
¡û
>W1810756430
QPFD01000001
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
141115
141187
+
Arg
CCG
[ENA]
¡û
>W2010271943
CABKTT020000020
Actinomycetota
Tessaracoccus massiliensis [CABKTT]
578589
578662
+
Arg
CCG
[ENA]
¡û
>W2010592384
JABENC010000001
Actinomycetota
Naumannella sp. ID2617S [JABENC]
997766
997692
-
Arg
CCG
[ENA]
¡û
>W2010739146
JACJFZ010000001
Actinomycetota
Tessaracoccus sp. MC1756 [JACJFZ]
905912
905840
-
Arg
CCG
[ENA]
¡û
>W2011005277
NMVK01000002
Actinomycetota
Propionibacteriaceae bacterium NML 150272 [NMVK]
84654
84728
+
Arg
CCG
[ENA]
¡û
>W2011005336
NMVL01000011
Actinomycetota
Propionibacteriaceae bacterium NML 140250 [NMVL]
99039
98965
-
Arg
CCG
[ENA]
¡û
>W2011005413
NMVM01000005
Actinomycetota
Propionibacteriaceae bacterium NML 090529 [NMVM]
183167
183093
-
Arg
CCG
[ENA]
¡û
>W2011005455
NMVN01000016
Actinomycetota
Propionibacteriaceae bacterium NML 061049 [NMVN]
204356
204430
+
Arg
CCG
[ENA]
¡û
>W2011005479
NMVO01000012
Actinomycetota
Propionibacteriaceae bacterium NML 030167 [NMVO]
202343
202417
+
Arg
CCG
[ENA]
¡û
>W2011005538
NMVP01000033
Actinomycetota
Propionibacteriaceae bacterium NML 020265 [NMVP]
197014
197088
+
Arg
CCG
[ENA]
¡û
>W2011005591
NMVQ01000034
Actinomycetota
Propionibacteriaceae bacterium NML 130396 [NMVQ]
129968
130042
+
Arg
CCG
[ENA]
¡û
>W2011185675
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
2544077
2544151
+
Arg
CCG
[ENA]
¡û
>W2011274031
QLVF01000942
Actinomycetota
Aeromicrobium sp. CPCC 204604 [QLVF]
559
487
-
Arg
CCG
[ENA]
¡û
>W2011413425
REFW01000003
Actinomycetota
Tessaracoccus sp. JDX10 [REFW]
181693
181765
+
Arg
CCG
[ENA]
¡û
>W2011484249
RQYZ01000001
Actinomycetota
Tessaracoccus sp. OH4464_COT-324 [RQYZ]
227711
227638
-
Arg
CCG
[ENA]
¡û
>W2011648676
SNXA01000008
Actinomycetota
Ponticoccus gilvus DSM 21351 [SNXA]
1116342
1116416
+
Arg
CCG
[ENA]
¡û
>W2012020694
VFOR01000002
Actinomycetota
Propioniferax innocua DSM 8251 [VFOR]
75435
75509
+
Arg
CCG
[ENA]
¡û
>W2012071273
VKKG01000005
Actinomycetota
Tessaracoccus rhinocerotis YIM 101269 [VKKG]
291153
291225
+
Arg
CCG
[ENA]
¡û
>W2012084276
VLNT01000002
Actinomycetota
Aeromicrobium sp. Co35 [VLNT]
253789
253862
+
Arg
CCG
[ENA]
¡û
>W2110446959
JAERWM010000010
Actinomycetota
Aeromicrobium sp. YIM 150415 [JAERWM]
42424
42497
+
Arg
CCG
[ENA]
¡û
>C211019782
AP024463
Actinomycetota
Arachnia rubra SK-1 [AP024463]
1831458
1831530
+
Arg
CCG
-
¡û
>C211307318
CP072384
Actinomycetota
Arachnia rubra DSMZ 100122 [CP072384]
1850901
1850973
+
Arg
CCG
-
¡û
>C211307436
CP072386
Actinomycetota
Arachnia propionica F0231 [CP072386]
1493748
1493676
-
Arg
CCG
-
¡û
>C211409204
LR214441
Actinomycetota
Tessaracoccus lapidicaptus [LR214441]
298064
298136
+
Arg
CCG
-
¡û
>W2110740021
JAJEWM010000001
Actinomycetota
Tessaracoccus sp. OS52 [JAJEWM]
1390984
1391056
+
Arg
CCG
[ENA]
¡û
>W1710521722
FNGP01000004
Actinomycetota
Tessaracoccus oleiagri [FNGP]
297920
297848
-
Arg
CCG
[ENA]
¡û
>W1710588329
FQZG01000026
Actinomycetota
Tessaracoccus bendigoensis DSM 12906 [FQZG]
28012
27938
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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