This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370624 (21 seq.)
>C001223
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5292286
5292215
-
Gln
TTG
[Ensembl]
¡û
>C015304
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
1891951
1891880
-
Gln
TTG
[Ensembl]
¡û
>WENV183702479
PDVI01000260
[PDVI] alkali sediment metagenome; glacial lake sediment
1240
1167
-
Gln
TTG
[ENA]
¢þ
>WENV170347754
CETG01160964
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
303
374
+
Gln
TTG
[ENA]
¢þ
>WENV170347803
CETG01163440
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
384
313
-
Gln
TTG
[ENA]
¢þ
>WENV170363820
CETM01190207
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
498
571
+
Gln
TTG
[ENA]
¢þ
>WENV170381799
CETW01202884
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
242
313
+
Gln
TTG
[ENA]
¢þ
>C181004902
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
2704132
2704059
-
Gln
TTG
-
¡û
>C181078403
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
757690
757763
+
Gln
TTG
-
¡û
>W09101154
AAEA01000007
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
132580
132507
-
Gln
TTG
[ENA]
¡û
>W141805278
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
1559817
1559745
-
Gln
TTG
[ENA]
¡û
>W1810519367
QCEZ01000007
Cyanobacteriota
Prochlorococcus sp. AG-363-A06 [QCEZ]
20689
20760
+
Gln
TTG
[ENA]
¡û
>W1810519963
QCFX01000004
Cyanobacteriota
Prochlorococcus sp. AG-363-N20 [QCFX]
80343
80272
-
Gln
TTG
[ENA]
¡û
>W1810522916
QCJW01000007
Cyanobacteriota
Prochlorococcus sp. AG-409-G20 [QCJW]
60986
61059
+
Gln
TTG
[ENA]
¡û
>W1810523030
QCKB01000007
Cyanobacteriota
Prochlorococcus sp. AG-409-J16 [QCKB]
22608
22679
+
Gln
TTG
[ENA]
¡û
>W1810523040
QCKC01000001
Cyanobacteriota
Prochlorococcus sp. AG-409-J19 [QCKC]
22417
22488
+
Gln
TTG
[ENA]
¡û
>W1810523415
QCKO01000005
Cyanobacteriota
Prochlorococcus sp. AG-409-P19 [QCKO]
17006
17077
+
Gln
TTG
[ENA]
¡û
>C151081809
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
1557818
1557746
-
Gln
TTG
[Ensembl]
¡û
>C161002511
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
5076523
5076596
+
Gln
TTG
[Ensembl]
¡û
>C161038928
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
1891695
1891621
-
Gln
TTG
[Ensembl]
¡û
>W1610656811
LJOR01000055
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
87975
87902
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK