This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370729 (48 seq.)
>W131229285
AUGR01000015
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
65276
65202
-
Gln
CTG
[ENA]
¡û
>W131222083
AUAZ01000012
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
69745
69671
-
Gln
CTG
[ENA]
¡û
>WENV180376961
OBOM01172243
[OBOM] marine metagenome; Seawater
196
270
+
Gln
CTG
[ENA]
¡û
>WENV170015895
AZIJ01003353
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
374
300
-
Gln
CTG
[ENA]
¡û
>WENV170112107
CEGD01000515
[CEGD] microbial mat metagenome; grass silage
3306
3232
-
Gln
CTG
[ENA]
¡û
>WENV170112229
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
9597
9523
-
Gln
CTG
[ENA]
¡û
>WENV170112233
CEGE01000134
[CEGE] microbial mat metagenome; grass silage
5754
5680
-
Gln
CTG
[ENA]
¡û
>WENV170112588
CEGF01005255
[CEGF] microbial mat metagenome; grass silage
665
591
-
Gln
CTG
[ENA]
¡û
>WENV170112634
CEGF01007987
[CEGF] microbial mat metagenome; grass silage
506
580
+
Gln
CTG
[ENA]
¡û
>WENV170112640
CEGF01008372
[CEGF] microbial mat metagenome; grass silage
202
128
-
Gln
CTG
[ENA]
¡û
>WENV170655191
JTFN01010862
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
671
597
-
Gln
CTG
[ENA]
¡û
>WENV170655545
JTFN01042943
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
497
571
+
Gln
CTG
[ENA]
¡û
>WENV170655952
JTFN01100748
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
186
112
-
Gln
CTG
[ENA]
¡û
>WENV170656076
JTFN01126264
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
23
97
+
Gln
CTG
[ENA]
¡û
>WENV170656388
JTFO01012187
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
23
97
+
Gln
CTG
[ENA]
¡û
>WENV170656742
JTFO01039205
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
37
111
+
Gln
CTG
[ENA]
¡û
>WENV170656830
JTFO01048048
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
497
571
+
Gln
CTG
[ENA]
¡û
>WENV170657113
JTFO01087545
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
17
91
+
Gln
CTG
[ENA]
¡û
>WENV170657114
JTFO01087616
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
23
97
+
Gln
CTG
[ENA]
¡û
>WENV170657253
JTFO01111155
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
365
439
+
Gln
CTG
[ENA]
¡û
>WENV170657465
JTFO01159652
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
17
91
+
Gln
CTG
[ENA]
¡û
>WENV170658042
JTFP01048338
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
605
679
+
Gln
CTG
[ENA]
¡û
>WENV170658096
JTFP01054642
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1039
965
-
Gln
CTG
[ENA]
¡û
>W141712303
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
144276
144202
-
Gln
CTG
[ENA]
¡û
>W141712307
JMQN01000015
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
140353
140279
-
Gln
CTG
[ENA]
¡û
>W1810248952
PQBW01002382
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
145
71
-
Gln
CTG
[ENA]
¡û
>W1810400750
PYGI01000022
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
28261
28187
-
Gln
CTG
[ENA]
¡û
>W2011633655
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
281532
281606
+
Gln
CTG
[ENA]
¡û
>W2011633659
SMFU01000009
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
286582
286656
+
Gln
CTG
[ENA]
¡û
>W2011963801
VAWC01000005
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
213811
213885
+
Gln
CTG
[ENA]
¡û
>W2110026493
BMIJ01000007
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
146374
146300
-
Gln
CTG
[ENA]
¡û
>W2110026497
BMIJ01000007
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
142440
142366
-
Gln
CTG
[ENA]
¡û
>W2110269392
JACVEW010000026
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
88
162
+
Gln
CTG
[ENA]
¡û
>W2110640661
JAHREP010000002
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
116147
116073
-
Gln
CTG
[ENA]
¡û
>W2110640666
JAHREP010000002
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
112125
112051
-
Gln
CTG
[ENA]
¡û
>C211000166
AP014546
Gammaproteobacteria
Neptunomonas japonica JAMM 1380 [AP014546]
3552779
3552853
+
Gln
CTG
-
¡û
>C211032083
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3230292
3230366
+
Gln
CTG
-
¡û
>C211032087
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3234135
3234209
+
Gln
CTG
-
¡û
>W2110747043
LJYU01000001
Gammaproteobacteria
Neptunomonas qingdaonensis P10-2-4 [LJYU]
84442
84516
+
Gln
CTG
[ENA]
¡û
>C231313143
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
576142
576068
-
Gln
CTG
-
¡û
>C241083078
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
3065356
3065430
+
Gln
CTG
-
¡û
>W11170395
AFPL01000022
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
230626
230700
+
Gln
CTG
[ENA]
¡û
>W1710533770
FNRJ01000013
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
3982
3908
-
Gln
CTG
[ENA]
¡û
>W1710533781
FNRJ01000019
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
55400
55326
-
Gln
CTG
[ENA]
¡û
>W1710539741
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
119476
119550
+
Gln
CTG
[ENA]
¡û
>W1710539745
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
124691
124765
+
Gln
CTG
[ENA]
¡û
>W1710562222
FOOU01000011
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
73124
73050
-
Gln
CTG
[ENA]
¡û
>W1710596393
FTMN01000006
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
272392
272466
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK