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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.370792 (112 seq.)
>W1710869747
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
138270
138196
-
Glu
CTC
[ENA]
¡û
>W1710870165
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
355885
355959
+
Glu
CTC
[ENA]
¡û
>W1710870385
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
184031
183957
-
Glu
CTC
[ENA]
¡û
>W1710870472
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1033390
1033316
-
Glu
CTC
[ENA]
¡û
>W1710870737
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
554710
554636
-
Glu
CTC
[ENA]
¡û
>W1710870799
LMKU01000029
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
244971
245045
+
Glu
CTC
[ENA]
¡û
>W1710870896
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
101062
100988
-
Glu
CTC
[ENA]
¡û
>W1710870940
LMKX01000007
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
392540
392466
-
Glu
CTC
[ENA]
¡û
>W1710871029
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1424797
1424723
-
Glu
CTC
[ENA]
¡û
>W1710871179
LMLC01000002
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
119734
119660
-
Glu
CTC
[ENA]
¡û
>W1710871216
LMLD01000009
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
88206
88132
-
Glu
CTC
[ENA]
¡û
>W1710871314
LMLF01000005
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
429566
429492
-
Glu
CTC
[ENA]
¡û
>W1710872311
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
582107
582033
-
Glu
CTC
[ENA]
¡û
>W1710876748
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
322047
322121
+
Glu
CTC
[ENA]
¡û
>W1710877216
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
411118
411192
+
Glu
CTC
[ENA]
¡û
>W1710878000
LMQO01000003
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
429612
429538
-
Glu
CTC
[ENA]
¡û
>W1710879480
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
544520
544594
+
Glu
CTC
[ENA]
¡û
>W1710894019
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
75661
75735
+
Glu
CTC
[ENA]
¡û
>W1711603476
MOLY01000048
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
165906
165980
+
Glu
CTC
[ENA]
¡û
>C171030395
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
4800182
4800256
+
Glu
CTC
-
¡û
>WENV170577467
FSSH01000037
[FSSH] freshwater metagenome; drinking water
245895
245821
-
Glu
CTC
[ENA]
¡û
>WENV170709303
LNFM01000251
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
92669
92595
-
Glu
CTC
[ENA]
¡û
>C191154763
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
3966185
3966111
-
Glu
CTC
-
¡û
>C191163773
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1598233
1598159
-
Glu
CTC
-
¡û
>W141801030
JPDP01000323
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
7673
7747
+
Glu
CTC
[ENA]
¡û
>W141805183
JPJC01000242
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
12943
13017
+
Glu
CTC
[ENA]
¡û
>W1810463391
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
53522
53596
+
Glu
CTC
[ENA]
¡û
>W1810475054
QAIS01000276
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
30838
30764
-
Glu
CTC
[ENA]
¡û
>W1810476705
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
552299
552225
-
Glu
CTC
[ENA]
¡û
>W1810476783
QAOG01000006
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
16444
16370
-
Glu
CTC
[ENA]
¡û
>W1810486878
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
726498
726424
-
Glu
CTC
[ENA]
¡û
>SRA1014929
SRR023845.385851
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
53
127
+
Glu
CTC
[SRA]
>SRA1015019
SRR023845.424571
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
31
105
+
Glu
CTC
[SRA]
>SRA1015234
SRR023845.512299
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
31
105
+
Glu
CTC
[SRA]
>SRA1015279
SRR023845.537158
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
240
+
Glu
CTC
[SRA]
>SRA1015281
SRR023845.538096
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
228
154
-
Glu
CTC
[SRA]
>SRA1015304
SRR023846.9990
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
223
149
-
Glu
CTC
[SRA]
>SRA1015627
SRR023846.137187
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
36
110
+
Glu
CTC
[SRA]
>SRA1015755
SRR023846.182412
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
128
202
+
Glu
CTC
[SRA]
>SRA1015951
SRR023846.279595
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
223
149
-
Glu
CTC
[SRA]
>SRA1016019
SRR023846.313961
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
75
1
-
Glu
CTC
[SRA]
>C151073223
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
910591
910517
-
Glu
CTC
[Ensembl]
¡û
>W2010302905
CABVLI010000039
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
7812
7738
-
Glu
CTC
[ENA]
¡û
>W2010311807
CABWMY010000019
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
247041
246967
-
Glu
CTC
[ENA]
¡û
>W2010369969
CAHJWJ010000006
Alphaproteobacteria
Sphingomonas bacterium [CAHJWJ]
91181
91107
-
Glu
CTC
[ENA]
¡û
>W2010533977
JAAOYQ010000008
Alphaproteobacteria
Sphingomonas aerolata AS2.4 [JAAOYQ]
53580
53654
+
Glu
CTC
[ENA]
¡û
>W2010720854
JACIAP010000004
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
53604
53678
+
Glu
CTC
[ENA]
¡û
>W2010732175
JACIJR010000002
Alphaproteobacteria
Sphingomonas prati DSM 103336 [JACIJR]
277843
277917
+
Glu
CTC
[ENA]
¡û
>W2011354871
RAPZ01000010
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
483154
483228
+
Glu
CTC
[ENA]
¡û
>W2011404454
RCWT01000009
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
691021
690947
-
Glu
CTC
[ENA]
¡û
>W2011404780
RCWY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
411107
411181
+
Glu
CTC
[ENA]
¡û
>W2011407532
RCZC01000001
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
410487
410561
+
Glu
CTC
[ENA]
¡û
>W2011536237
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
1264881
1264955
+
Glu
CTC
[ENA]
¡û
>W2011560392
SGIS01000010
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
15259
15185
-
Glu
CTC
[ENA]
¡û
>W2011578916
SGXR01000005
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
151366
151292
-
Glu
CTC
[ENA]
¡û
>W2011619339
SLUY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
483329
483403
+
Glu
CTC
[ENA]
¡û
>W2011623846
SLXW01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
634948
634874
-
Glu
CTC
[ENA]
¡û
>W2011624052
SLYA01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
609488
609414
-
Glu
CTC
[ENA]
¡û
>W2011624201
SLYD01000008
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
97924
97998
+
Glu
CTC
[ENA]
¡û
>W2011624277
SLYF01000005
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
111910
111984
+
Glu
CTC
[ENA]
¡û
>W2012106774
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
2195149
2195223
+
Glu
CTC
[ENA]
¡û
>W2012425988
WRPJ01000006
Alphaproteobacteria
Sphingomonas prati W18RD [WRPJ]
54638
54564
-
Glu
CTC
[ENA]
¡û
>W2110020656
BMDW01000001
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
83035
83109
+
Glu
CTC
[ENA]
¡û
>W2110027966
BMJP01000001
Alphaproteobacteria
Sphingomonas prati CGMCC 1.15645 [BMJP]
336015
335941
-
Glu
CTC
[ENA]
¡û
>W2110051927
BNAQ01000002
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
563031
563105
+
Glu
CTC
[ENA]
¡û
>W2110243498
JACONT010000014
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
45351
45425
+
Glu
CTC
[ENA]
¡û
>W2110290231
JACYTY010000003
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
53438
53512
+
Glu
CTC
[ENA]
¡û
>W2110290261
JACYTZ010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
53645
53719
+
Glu
CTC
[ENA]
¡û
>W2110290873
JACYUP010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13733 CFBP13733 [JACYUP]
697433
697359
-
Glu
CTC
[ENA]
¡û
>W2110291001
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
1017251
1017325
+
Glu
CTC
[ENA]
¡û
>W2110291386
JACYVA010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13720 CFBP13720 [JACYVA]
384758
384832
+
Glu
CTC
[ENA]
¡û
>W2110291618
JACYVG010000006
Alphaproteobacteria
Sphingomonas sp. CFBP 13714 CFBP13714 [JACYVG]
53744
53818
+
Glu
CTC
[ENA]
¡û
>W2110291799
JACYVM010000002
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
554204
554130
-
Glu
CTC
[ENA]
¡û
>W2110302294
JADBIA010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
332502
332428
-
Glu
CTC
[ENA]
¡û
>W2110427261
JAELXS010000004
Alphaproteobacteria
Sphingomonas sp. BT553 [JAELXS]
360324
360398
+
Glu
CTC
[ENA]
¡û
>W2110554367
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
3800608
3800534
-
Glu
CTC
[ENA]
¡û
>C211140882
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
2713203
2713277
+
Glu
CTC
-
¡û
>C231406207
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
1534475
1534401
-
Glu
CTC
-
¡û
>C231416172
CP099617
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29LAMAA1 [CP099617]
814796
814722
-
Glu
CTC
-
¡û
>C231416225
CP099619
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29MARTA1 [CP099619]
582378
582304
-
Glu
CTC
-
¡û
>C231416278
CP099621
Alphaproteobacteria
Sphingomonadaceae bacterium OTU29THOMA1 [CP099621]
574949
574875
-
Glu
CTC
-
¡û
>C231441513
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
580330
580256
-
Glu
CTC
-
¡û
>C231463758
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
1119186
1119260
+
Glu
CTC
-
¡û
>C231536453
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
914876
914950
+
Glu
CTC
-
¡û
>C231536500
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
797542
797616
+
Glu
CTC
-
¡û
>C241006577
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
3576404
3576330
-
Glu
CTC
-
¡û
>C241006637
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
3938915
3938841
-
Glu
CTC
-
¡û
>W1511352577
JROH01000037
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
25746
25672
-
Glu
CTC
[ENA]
¡û
>W1511357063
JRVI01000077
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
2038
1964
-
Glu
CTC
[ENA]
¡û
>W121031758
AHHA01000021
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
298571
298497
-
Glu
CTC
[ENA]
¡û
>W121033266
AHIS01000014
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
14674
14600
-
Glu
CTC
[ENA]
¡û
>W121046799
AIDW01000011
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
8078
8004
-
Glu
CTC
[ENA]
¡û
>W1610732093
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
138270
138196
-
Glu
CTC
[ENA]
¡û
>W1610732511
LMKH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
355885
355959
+
Glu
CTC
[ENA]
¡û
>W1610732731
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
184031
183957
-
Glu
CTC
[ENA]
¡û
>W1610732818
LMKN01000008
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1033390
1033316
-
Glu
CTC
[ENA]
¡û
>W1610733083
LMKT01000012
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
554710
554636
-
Glu
CTC
[ENA]
¡û
>W1610733145
LMKU01000029
Alphaproteobacteria
Sphingomonas sp. Leaf25 [LMKU]
244971
245045
+
Glu
CTC
[ENA]
¡û
>W1610733242
LMKW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
101062
100988
-
Glu
CTC
[ENA]
¡û
>W1610733286
LMKX01000007
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
392540
392466
-
Glu
CTC
[ENA]
¡û
>W1610733375
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
1424797
1424723
-
Glu
CTC
[ENA]
¡û
>W1610733525
LMLC01000002
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
119734
119660
-
Glu
CTC
[ENA]
¡û
>W1610733562
LMLD01000009
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
88206
88132
-
Glu
CTC
[ENA]
¡û
>W1610733660
LMLF01000005
Alphaproteobacteria
Sphingomonas sp. Leaf42 [LMLF]
429566
429492
-
Glu
CTC
[ENA]
¡û
>W1610734657
LMLW01000009
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
582107
582033
-
Glu
CTC
[ENA]
¡û
>W1610739094
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
322047
322121
+
Glu
CTC
[ENA]
¡û
>W1610739562
LMPX01000002
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
411118
411192
+
Glu
CTC
[ENA]
¡û
>W1610740346
LMQO01000003
Alphaproteobacteria
Sphingomonas sp. Leaf407 [LMQO]
429612
429538
-
Glu
CTC
[ENA]
¡û
>W1610741826
LMRS01000012
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
544520
544594
+
Glu
CTC
[ENA]
¡û
>W1610754285
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
75661
75735
+
Glu
CTC
[ENA]
¡û
>W1710509093
FMWX01000001
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
879228
879302
+
Glu
CTC
[ENA]
¡û
>W1710571529
FOVZ01000003
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
468676
468750
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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