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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.371066 (81 seq.)
>W1710872706
LMME01000023
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
271392
271466
+
Glu
TTC
[ENA]
¡û
>W1710872782
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
225028
225102
+
Glu
TTC
[ENA]
¡û
>W1710873085
LMMN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
99406
99480
+
Glu
TTC
[ENA]
¡û
>W1710873187
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
226236
226310
+
Glu
TTC
[ENA]
¡û
>W1710873253
LMMQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
9868
9942
+
Glu
TTC
[ENA]
¡û
>W1710874367
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
32520
32594
+
Glu
TTC
[ENA]
¡û
>W1710874424
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
208687
208761
+
Glu
TTC
[ENA]
¡û
>W1710874472
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9736
9810
+
Glu
TTC
[ENA]
¡û
>W1710874562
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
102965
102891
-
Glu
TTC
[ENA]
¡û
>W1710878285
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
121329
121255
-
Glu
TTC
[ENA]
¡û
>W1711078698
LSNC01000062
Alphaproteobacteria
Methylorubrum populi [LSNC]
48476
48550
+
Glu
TTC
[ENA]
¡û
>W1711571749
MNAO01000071
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
4654
4580
-
Glu
TTC
[ENA]
¡û
>W131051714
AMXU01000003
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
228805
228731
-
Glu
TTC
[ENA]
¡û
>C171092174
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1419883
1419809
-
Glu
TTC
-
¡û
>C171115184
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1758649
1758723
+
Glu
TTC
-
¡û
>W08002396
ABEX01000004
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
329778
329707
-
Glu
TTC
[ENA]
¡û
>C08006477
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
198806
198880
+
Glu
TTC
[Ensembl]
¡û
>W141277762
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
1092890
1092964
+
Glu
TTC
[ENA]
¡û
>C08006626
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
217545
217619
+
Glu
TTC
[Ensembl]
¡û
>C181000338
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
126185
126259
+
Glu
TTC
-
¡û
>C181175626
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
109489
109563
+
Glu
TTC
-
¡û
>C181227883
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
142741
142667
-
Glu
TTC
-
¡û
>W09106853
ABEC01000005
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
108094
108168
+
Glu
TTC
[ENA]
¡û
>W09107202
ABFR01000015
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
107829
107903
+
Glu
TTC
[ENA]
¡û
>W1910006611
BAUX01000002
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
134455
134381
-
Glu
TTC
[ENA]
¡û
>C09107408
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
121619
121693
+
Glu
TTC
[Ensembl]
¡û
>C09107492
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
61827
61901
+
Glu
TTC
[Ensembl]
¡û
>C09107595
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
61782
61856
+
Glu
TTC
[Ensembl]
¡û
>W1810658552
QJJJ01000013
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
25194
25120
-
Glu
TTC
[ENA]
¡û
>SRA1015391
SRR023846.40264
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1015580
SRR023846.117646
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1015955
SRR023846.282969
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1016115
SRR023846.353221
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>W2010100655
BJVP01000019
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
24136
24210
+
Glu
TTC
[ENA]
¡û
>W2010105723
BJZT01000036
Alphaproteobacteria
Methylobacterium haplocladii NBRC 107714 [BJZT]
48003
48077
+
Glu
TTC
[ENA]
¡û
>W2010169361
CABFVH010000077
Alphaproteobacteria
Methylobacterium dankookense SW08-7 [CABFVH]
13409
13483
+
Glu
TTC
[ENA]
¡û
>W2010535226
JAAPAY010000039
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
73041
73115
+
Glu
TTC
[ENA]
¡û
>W2010712864
JACHOS010000001
Alphaproteobacteria
Methylorubrum rhodesianum DSM 5687 [JACHOS]
411989
411915
-
Glu
TTC
[ENA]
¡û
>W2010715301
JACHWM010000004
Alphaproteobacteria
Methylobacterium sp. R2-1 [JACHWM]
28962
28888
-
Glu
TTC
[ENA]
¡û
>W2010724670
JACIDN010000001
Alphaproteobacteria
Methylobacterium brachythecii DSM 24105 [JACIDN]
406309
406383
+
Glu
TTC
[ENA]
¡û
>W2010740288
JACJIB010000002
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
705612
705686
+
Glu
TTC
[ENA]
¡û
>W2010740967
JACJIN010000004
Alphaproteobacteria
Methylobacterium sp. RAS18 [JACJIN]
197007
197081
+
Glu
TTC
[ENA]
¡û
>W2011398173
RCIG01000061
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
2492
2418
-
Glu
TTC
[ENA]
¡û
>W2011676689
SRHQ01000026
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
1101
1027
-
Glu
TTC
[ENA]
¡û
>W2012127115
VRVE01000015
Alphaproteobacteria
Methylobacterium sp. WL9 [VRVE]
28708
28634
-
Glu
TTC
[ENA]
¡û
>W2012311097
WEKV01000020
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
716639
716713
+
Glu
TTC
[ENA]
¡û
>W2110280722
JACWFI010000037
Alphaproteobacteria
Methylorubrum populi I1-R3 [JACWFI]
107591
107665
+
Glu
TTC
[ENA]
¡û
>W2110325608
JADIJP010000002
Alphaproteobacteria
Methylobacterium sp. SD274 [JADIJP]
226228
226154
-
Glu
TTC
[ENA]
¡û
>C201079707
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
199384
199458
+
Glu
TTC
-
¡û
>C201203431
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
144695
144769
+
Glu
TTC
-
¡û
>C201203487
CP047608
Alphaproteobacteria
Methylobacterium sp. CLZ [CP047608]
144695
144769
+
Glu
TTC
-
¡û
>C231024533
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
167925
167999
+
Glu
TTC
-
¡û
>C231252052
CP088247
Alphaproteobacteria
Methylorubrum sp. B1-46 [CP088247]
259456
259530
+
Glu
TTC
-
¡û
>W2110762728
RCVL01000017
Alphaproteobacteria
Methylorubrum sp. DB1722 [RCVL]
2581
2507
-
Glu
TTC
[ENA]
¡û
>C231527971
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
5256625
5256699
+
Glu
TTC
-
¡û
>C231528053
CP110131
Alphaproteobacteria
Methylorubrum extorquens NBC_00036 [CP110131]
1359250
1359176
-
Glu
TTC
-
¡û
>W2130017684
JACWCW010000070
Alphaproteobacteria
Methylorubrum rhodesianum I1-R3 [JACWCW]
107570
107644
+
Glu
TTC
[ENA]
¡û
>C241180442
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
157720
157794
+
Glu
TTC
-
¡û
>C241181950
CP077638
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP077638]
204589
204663
+
Glu
TTC
-
¡û
>W2310012996
BPQI01000239
Alphaproteobacteria
Methylobacterium dankookense DSM 22415 [BPQI]
3012
3086
+
Glu
TTC
[ENA]
¡û
>W2310013187
BPQN01000004
Alphaproteobacteria
Methylobacterium haplocladii DSM 24195 [BPQN]
5999
6073
+
Glu
TTC
[ENA]
¡û
>W2310013498
BPQT01000039
Alphaproteobacteria
Methylobacterium marchantiae DSM 21328 [BPQT]
5316
5242
-
Glu
TTC
[ENA]
¡û
>W2310013813
BPRA01000017
Alphaproteobacteria
Methylobacterium thuringiense DSM 23674 [BPRA]
86953
86879
-
Glu
TTC
[ENA]
¡û
>W2310013886
BPRC01000012
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
92076
92150
+
Glu
TTC
[ENA]
¡û
>W2310013924
BPRD01000135
Alphaproteobacteria
Methylorubrum podarium DSM 15083 [BPRD]
6165
6239
+
Glu
TTC
[ENA]
¡û
>W2310014014
BPRF01000012
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BPRF]
156051
156125
+
Glu
TTC
[ENA]
¡û
>W2310026308
BSPG01000034
Alphaproteobacteria
Methylobacterium brachythecii NBRC 107710 [BSPG]
26385
26311
-
Glu
TTC
[ENA]
¡û
>C161004954
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
50897
50971
+
Glu
TTC
[Ensembl]
¡û
>W1610043193
BAZP01001979
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
482
408
-
Glu
TTC
[ENA]
¡û
>W121010677
AGJK01000072
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
10205
10279
+
Glu
TTC
[ENA]
¡û
>W1610735128
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
225028
225102
+
Glu
TTC
[ENA]
¡û
>W1610735431
LMMN01000006
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
99406
99480
+
Glu
TTC
[ENA]
¡û
>W1610735533
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
226236
226310
+
Glu
TTC
[ENA]
¡û
>W1610735599
LMMQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
9868
9942
+
Glu
TTC
[ENA]
¡û
>W1610736713
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
32520
32594
+
Glu
TTC
[ENA]
¡û
>W1610736770
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
208687
208761
+
Glu
TTC
[ENA]
¡û
>W1610736818
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9736
9810
+
Glu
TTC
[ENA]
¡û
>W1610736908
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
102965
102891
-
Glu
TTC
[ENA]
¡û
>W1610740631
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
121329
121255
-
Glu
TTC
[ENA]
¡û
>W1610917608
LSNC01000062
Alphaproteobacteria
Methylorubrum populi [LSNC]
48476
48550
+
Glu
TTC
[ENA]
¡û
>W1710040353
BAZP01001979
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
482
408
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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