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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372150 (57 seq.)
>W1711135973
LUZR01000011
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
7031
6957
-
Val
CAC
[ENA]
¡û
>W1711385757
MEEO01000056
Betaproteobacteria
Nitrosomonadales bacterium SCN 54-20 [MEEO]
39455
39381
-
Val
CAC
[ENA]
¡û
>W1711504138
MKUG01000171
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
51515
51441
-
Val
CAC
[ENA]
¡û
>W1711505609
MKVR01000052
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
139853
139927
+
Val
CAC
[ENA]
¡û
>W1711583874
MNXU01000008
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_68_42 [MNXU]
25748
25822
+
Val
CAC
[ENA]
¡û
>C171103248
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
3127717
3127643
-
Val
CAC
-
¡û
>WENV180037173
FVAA010699223
[FVAA] soil metagenome; Soil
45
118
+
Val
CAC
[ENA]
¢þ
>WENV180099482
NMRC01007877
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
835
909
+
Val
CAC
[ENA]
¢þ
>WENV180295694
OBIZ01237107
[OBIZ] soil metagenome; soil
216
290
+
Val
CAC
[ENA]
¢þ
>WENV180343554
OBLK01036034
[OBLK] soil metagenome; Clay
289
215
-
Val
CAC
[ENA]
¢þ
>WENV181188269
OEOE01064486
[OEOE] activated sludge metagenome; Activated Sludge
207
281
+
Val
CAC
[ENA]
¢þ
>WENV181230850
OFEK01004234
[OFEK] activated sludge metagenome; Anaerobic digester
3125
3199
+
Val
CAC
[ENA]
¢þ
>WENV181292692
OFHF01006624
[OFHF] soil metagenome; Clay
1225
1299
+
Val
CAC
[ENA]
¢þ
>WENV181294611
OFHH01015891
[OFHH] soil metagenome; Clay
457
383
-
Val
CAC
[ENA]
¢þ
>WENV181295777
OFHJ01000556
[OFHJ] soil metagenome; Clay
10370
10296
-
Val
CAC
[ENA]
¢þ
>WENV181295859
OFHJ01001356
[OFHJ] soil metagenome; Clay
5894
5820
-
Val
CAC
[ENA]
¢þ
>WENV181297539
OFHK01066457
[OFHK] soil metagenome; Clay
179
105
-
Val
CAC
[ENA]
¢þ
>WENV181380762
OFRE01005512
[OFRE] wastewater metagenome; Exp Tend NO 50WW
449
375
-
Val
CAC
[ENA]
¢þ
>W141169876
AXWS01000008
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
371073
371147
+
Val
CAC
[ENA]
¡û
>WENV183666880
ORJL010593269
[ORJL] groundwater metagenome; groundwater
5071
5145
+
Val
CAC
[ENA]
¢þ
>WENV183676515
ORJL011634165
[ORJL] groundwater metagenome; groundwater
7
81
+
Val
CAC
[ENA]
¢þ
>WENV183677167
ORJL011719116
[ORJL] groundwater metagenome; groundwater
4062
4136
+
Val
CAC
[ENA]
¢þ
>WENV183682086
ORMF010396039
[ORMF] groundwater metagenome; groundwater
69087
69161
+
Val
CAC
[ENA]
¢þ
>WENV183683706
ORMF010610414
[ORMF] groundwater metagenome; groundwater
333
407
+
Val
CAC
[ENA]
¢þ
>WENV183684438
ORMF010710831
[ORMF] groundwater metagenome; groundwater
4144
4070
-
Val
CAC
[ENA]
¢þ
>WENV170553894
CXWK01036772
[CXWK] wastewater metagenome; activated sludge
1566
1492
-
Val
CAC
[ENA]
¢þ
>WENV170635017
JAHE01178775
[JAHE] sediment metagenome; lake sediment
112
186
+
Val
CAC
[ENA]
¢þ
>WENV170705418
LNAO01000260
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6378
6304
-
Val
CAC
[ENA]
¢þ
>WENV170705869
LNAP01000536
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7428
7502
+
Val
CAC
[ENA]
¢þ
>C191007519
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1504541
1504615
+
Val
CAC
-
¡û
>W141558410
JHVX01000002
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
304019
304093
+
Val
CAC
[ENA]
¡û
>W1910183543
BJNV01000008
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
3864
3790
-
Val
CAC
[ENA]
¡û
>W1910228573
FNVK01000028
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
611
537
-
Val
CAC
[ENA]
¡û
>W1910744080
MHZX01000091
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
32800
32726
-
Val
CAC
[ENA]
¡û
>W1910828080
MWUM01000015
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
99820
99894
+
Val
CAC
[ENA]
¡û
>W1810463586
PZZR01000002
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
399455
399529
+
Val
CAC
[ENA]
¡û
>W1810477250
QAOR01000001
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
120165
120091
-
Val
CAC
[ENA]
¡û
>W1810503424
QBKC01000006
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
27240
27314
+
Val
CAC
[ENA]
¡û
>W1810696178
QLTB01000006
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
86225
86299
+
Val
CAC
[ENA]
¡û
>C151000915
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2445142
2445216
+
Val
CAC
[Ensembl]
¡û
>C151094461
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
3038270
3038196
-
Val
CAC
-
¡û
>W10105794
ACXV01000014
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
43384
43458
+
Val
CAC
[ENA]
¡û
>W11108114
ACXV01000014
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
43384
43458
+
Val
CAC
[ENA]
¡û
>W1511508778
JXQM01000019
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
173552
173626
+
Val
CAC
[ENA]
¡û
>C161040269
CP012157
Betaproteobacteria
Betaproteobacteria bacterium UKL13-2 [CP012157]
1691246
1691172
-
Val
CAC
-
¡û
>W1610085510
CTRL01000029
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
95668
95594
-
Val
CAC
[ENA]
¡û
>W1610947093
LUZR01000011
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
7031
6957
-
Val
CAC
[ENA]
¡û
>WENV080214
AATO01013219
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
189
115
-
Val
CAC
[ENA]
>W1710090099
CTRL01000029
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
95668
95594
-
Val
CAC
[ENA]
¡û
>W1710507925
FMVQ01000001
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
415211
415137
-
Val
CAC
[ENA]
¡û
>W1710527343
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
2515000
2515074
+
Val
CAC
[ENA]
¡û
>W1710527993
FNLO01000014
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
103461
103535
+
Val
CAC
[ENA]
¡û
>W1710547227
FOCT01000006
Betaproteobacteria
Nitrosospira multiformis [FOCT]
193210
193284
+
Val
CAC
[ENA]
¡û
>W1710563652
FOPV01000021
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
45210
45136
-
Val
CAC
[ENA]
¡û
>W1710570767
FOVJ01000001
Betaproteobacteria
Nitrosospira briensis [FOVJ]
1020152
1020226
+
Val
CAC
[ENA]
¡û
>W1710571476
FOVY01000008
Betaproteobacteria
Nitrosospira briensis [FOVY]
3210
3284
+
Val
CAC
[ENA]
¡û
>W1710579562
FPIQ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
63715
63641
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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