This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372299 (136 seq.)
>W1711284301
LZRE01000001
Chlamydiota
Chlamydia psittaci [LZRE]
91356
91285
-
Thr
GGT
[ENA]
¡û
>W1711284339
LZRF01000001
Chlamydiota
Chlamydia psittaci [LZRF]
91356
91285
-
Thr
GGT
[ENA]
¡û
>W1711284378
LZRG01000001
Chlamydiota
Chlamydia psittaci [LZRG]
91875
91804
-
Thr
GGT
[ENA]
¡û
>W1711284999
LZRX01000001
Chlamydiota
Chlamydia psittaci [LZRX]
91558
91487
-
Thr
GGT
[ENA]
¡û
>W1711285037
LZRY01000001
Chlamydiota
Chlamydia psittaci [LZRY]
91356
91285
-
Thr
GGT
[ENA]
¡û
>W1711285057
LZRZ01000001
Chlamydiota
Chlamydia psittaci [LZRZ]
91028
90957
-
Thr
GGT
[ENA]
¡û
>W1711285114
LZSA01000002
Chlamydiota
Chlamydia psittaci [LZSA]
91859
91788
-
Thr
GGT
[ENA]
¡û
>C171099924
CP019792
Chlamydiota
Chlamydia gallinacea JX-1 [CP019792]
104897
104968
+
Thr
GGT
-
¡û
>C171127892
LN554883
Chlamydiota
Chlamydia abortus 1H [LN554883]
778768
778697
-
Thr
GGT
-
¡û
>W131210640
ATKP01000009
Chlamydiota
Chlamydia psittaci 01DC11 [ATKP]
91773
91702
-
Thr
GGT
[ENA]
¡û
>W131210678
ATKQ01000013
Chlamydiota
Chlamydia psittaci 02DC15 [ATKQ]
91360
91289
-
Thr
GGT
[ENA]
¡û
>W131210703
ATKR01000002
Chlamydiota
Chlamydia psittaci 02DC16 [ATKR]
91848
91777
-
Thr
GGT
[ENA]
¡û
>W131210782
ATKT01000002
Chlamydiota
Chlamydia psittaci 02DC21 [ATKT]
90954
90883
-
Thr
GGT
[ENA]
¡û
>W131210817
ATKU01000064
Chlamydiota
Chlamydia psittaci 02DC22 [ATKU]
47894
47823
-
Thr
GGT
[ENA]
¡û
>W131210866
ATKV01000009
Chlamydiota
Chlamydia psittaci 02DC23 [ATKV]
91434
91363
-
Thr
GGT
[ENA]
¡û
>W131210936
ATKX01000020
Chlamydiota
Chlamydia psittaci 04DC42 [ATKX]
91438
91367
-
Thr
GGT
[ENA]
¡û
>W131210987
ATKY01000078
Chlamydiota
Chlamydia psittaci 08DC60 [ATKY]
54851
54780
-
Thr
GGT
[ENA]
¡û
>W131211049
ATLA01000006
Chlamydiota
Chlamydia psittaci 09DC78 [ATLA]
7208
7137
-
Thr
GGT
[ENA]
¡û
>W131211085
ATLB01000003
Chlamydiota
Chlamydia psittaci 09DC80 [ATLB]
91788
91717
-
Thr
GGT
[ENA]
¡û
>W131211121
ATLC01000043
Chlamydiota
Chlamydia psittaci 99DC5 [ATLC]
91784
91713
-
Thr
GGT
[ENA]
¡û
>W131211170
ATLD01000011
Chlamydiota
Chlamydia psittaci C19/98 [ATLD]
91851
91780
-
Thr
GGT
[ENA]
¡û
>W131211239
ATLF01000218
Chlamydiota
Chlamydia psittaci 06-1683 [ATLF]
762
691
-
Thr
GGT
[ENA]
¡û
>W131211618
ATMY01001303
Chlamydiota
Chlamydia psittaci 84-8471/1 [ATMY]
158
87
-
Thr
GGT
[ENA]
¡û
>W131211661
ATMZ01000184
Chlamydiota
Chlamydia psittaci C1/97 [ATMZ]
9642
9571
-
Thr
GGT
[ENA]
¡û
>W131211743
ATNB01000159
Chlamydiota
Chlamydia ibidis 10_1398_11 [ATNB]
34782
34711
-
Thr
GGT
[ENA]
¡û
>W131211781
ATNC01000361
Chlamydiota
Chlamydia psittaci 10_743_SC13 [ATNC]
1627
1556
-
Thr
GGT
[ENA]
¡û
>C004941
CR848038
Chlamydiota
Chlamydia abortus [CR848038]
778770
778699
-
Thr
GGT
[Ensembl]
¡û
>C006643
AE002161
Chlamydiota
Chlamydia pneumoniae AR39 [AE002161]
751545
751474
-
Thr
GGT
[Ensembl]
¡û
>C006696
BA000008
Chlamydiota
Chlamydia pneumoniae J138 [BA000008]
89327
89398
+
Thr
GGT
[Ensembl]
¡û
>C006734
AE009440
Chlamydiota
Chlamydia pneumoniae TW-183 [AE009440]
87151
87222
+
Thr
GGT
[Ensembl]
¡û
>WENV180038283
FVAA013226156
[FVAA] soil metagenome; Soil
75
4
-
Thr
GGT
[ENA]
¢þ
>WENV180107166
OAPF01046323
[OAPF] marine metagenome; ENVO:00002010
159
232
+
Thr
GGT
[ENA]
¢þ
>W141064080
APJW01000003
Chlamydiota
Chlamydia ibidis 10-1398/6 [APJW]
34985
34914
-
Thr
GGT
[ENA]
¡û
>WENV181173251
OEIV011320298
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
88
161
+
Thr
GGT
[ENA]
¢þ
>W141145611
AWUS01000004
Chlamydiota
Chlamydia gallinacea 08-1274/3 [AWUS]
76030
75959
-
Thr
GGT
[ENA]
¡û
>W141201314
AZBB01000008
Chlamydiota
Chlamydia pecorum DBDeUG [AZBB]
136640
136569
-
Thr
GGT
[ENA]
¡û
>W141201385
AZBD01000005
Chlamydiota
Chlamydia pecorum VR629 [AZBD]
442230
442159
-
Thr
GGT
[ENA]
¡û
>W141201428
AZBE01000014
Chlamydiota
Chlamydia pecorum IPTaLE [AZBE]
136638
136567
-
Thr
GGT
[ENA]
¡û
>WENV183695495
ORMF012400561
[ORMF] groundwater metagenome; groundwater
1445
1374
-
Thr
GGT
[ENA]
¢þ
>WENV170438448
CEUU01127393
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11
82
+
Thr
GGT
[ENA]
¢þ
>WENV170620452
FUWD013031967
[FUWD] metagenome; unknown
4209
4282
+
Thr
GGT
[ENA]
¢þ
>WENV170628061
FUWD013241266
[FUWD] metagenome; unknown
131926
131853
-
Thr
GGT
[ENA]
¢þ
>WENV170662490
JXWW01083776
[JXWW] soil metagenome; rice field; organic GM Plot
95
24
-
Thr
GGT
[ENA]
¢þ
>WENV170868882
MDTB01168590
[MDTB] marine metagenome; seawater
1972
1901
-
Thr
GGT
[ENA]
¢þ
>C181094088
CP024084
Chlamydiota
Chlamydia abortus GIMC 2006:CabB577 [CP024084]
778747
778676
-
Thr
GGT
-
¡û
>C181100052
CP024453
Chlamydiota
Chlamydia psittaci GIMC 2003:Cps25SM [CP024453]
802344
802273
-
Thr
GGT
-
¡û
>C181232060
LT993738
Chlamydiota
Chlamydia serpentis H15-1957-10C [LT993738]
66231
66302
+
Thr
GGT
-
¡û
>C191185944
CP041038
Chlamydiota
Chlamydia sp. Rostinovo-70 [CP041038]
260696
260625
-
Thr
GGT
-
¡û
>W141695068
JMBZ01000027
Chlamydiota
Chlamydia psittaci [JMBZ]
8823
8894
+
Thr
GGT
[ENA]
¡û
>W141695899
JMEI01000022
Chlamydiota
Chlamydia psittaci [JMEI]
28205
28276
+
Thr
GGT
[ENA]
¡û
>W1910209086
FLYP01000004
Chlamydiota
Chlamydiales bacterium SCGC AG-110-P3 [FLYP]
5649
5720
+
Thr
GGT
[ENA]
¡û
>W1910236530
FPIE01000003
Chlamydiota
Chlamydia abortus A22 [FPIE]
212412
212483
+
Thr
GGT
[ENA]
¡û
>W1910236570
FPIF01000003
Chlamydiota
Chlamydia abortus S82/3 [FPIF]
91262
91191
-
Thr
GGT
[ENA]
¡û
>W1910236680
FPIH01000003
Chlamydiota
Chlamydia abortus 86/30 [FPIH]
212525
212596
+
Thr
GGT
[ENA]
¡û
>W1910236763
FPIJ01000003
Chlamydiota
Chlamydia abortus T20 [FPIJ]
212431
212502
+
Thr
GGT
[ENA]
¡û
>W1910236797
FPIK01000002
Chlamydiota
Chlamydia abortus Dec-83 [FPIK]
212415
212486
+
Thr
GGT
[ENA]
¡û
>W1910236847
FPIL01000003
Chlamydiota
Chlamydia abortus POS [FPIL]
90209
90138
-
Thr
GGT
[ENA]
¡û
>W1910236876
FPIM01000001
Chlamydiota
Chlamydia abortus S1523 [FPIM]
90247
90176
-
Thr
GGT
[ENA]
¡û
>W1910237267
FPKZ01000001
Chlamydiota
Chlamydia abortus C1_98 [FPKZ]
684579
684650
+
Thr
GGT
[ENA]
¡û
>W1910238044
FPLR01000002
Chlamydiota
Chlamydia abortus 162STDY5437304 [FPLR]
90247
90176
-
Thr
GGT
[ENA]
¡û
>W1910238115
FPLV01000001
Chlamydiota
Chlamydia abortus C15_98 [FPLV]
687609
687680
+
Thr
GGT
[ENA]
¡û
>W1910238177
FPLW01000001
Chlamydiota
Chlamydia abortus 10DC86 [FPLW]
90252
90181
-
Thr
GGT
[ENA]
¡û
>W1910238191
FPLX01000001
Chlamydiota
Chlamydia abortus C21_98 [FPLX]
687677
687748
+
Thr
GGT
[ENA]
¡û
>W1910238229
FPLY01000001
Chlamydiota
Chlamydia abortus 10DC85 [FPLY]
684560
684631
+
Thr
GGT
[ENA]
¡û
>W1910238267
FPLZ01000001
Chlamydiota
Chlamydia abortus C22_98 [FPLZ]
684547
684618
+
Thr
GGT
[ENA]
¡û
>W1910238305
FPMA01000001
Chlamydiota
Chlamydia abortus 10DC83 [FPMA]
684554
684625
+
Thr
GGT
[ENA]
¡û
>W1910238381
FPMC01000001
Chlamydiota
Chlamydia abortus 10DC82 [FPMC]
684466
684537
+
Thr
GGT
[ENA]
¡û
>W1910238457
FPME01000001
Chlamydiota
Chlamydia abortus 162STDY5437303 [FPME]
687691
687762
+
Thr
GGT
[ENA]
¡û
>W1910238605
FPMI01000001
Chlamydiota
Chlamydia abortus C11_98 [FPMI]
684573
684644
+
Thr
GGT
[ENA]
¡û
>W1910238643
FPMJ01000001
Chlamydiota
Chlamydia abortus 99DC4 [FPMJ]
684489
684560
+
Thr
GGT
[ENA]
¡û
>W1910238752
FPMM01000001
Chlamydiota
Chlamydia abortus 09_04 [FPMM]
687859
687930
+
Thr
GGT
[ENA]
¡û
>W1910238816
FPMN01000001
Chlamydiota
Chlamydia abortus 99DC7 [FPMN]
90249
90178
-
Thr
GGT
[ENA]
¡û
>W1910238843
FPMO01000001
Chlamydiota
Chlamydia abortus 162STDY5437297 [FPMO]
90257
90186
-
Thr
GGT
[ENA]
¡û
>W1910238870
FPMP01000005
Chlamydiota
Chlamydia abortus S124_3A [FPMP]
3122
3193
+
Thr
GGT
[ENA]
¡û
>W1910239007
FPMS01000001
Chlamydiota
Chlamydia abortus 03DC37 [FPMS]
90228
90157
-
Thr
GGT
[ENA]
¡û
>W1910239022
FPMT01000001
Chlamydiota
Chlamydia abortus C20_98 [FPMT]
684482
684553
+
Thr
GGT
[ENA]
¡û
>W1910239097
FPMU01000001
Chlamydiota
Chlamydia abortus 03DC36 [FPMU]
90245
90174
-
Thr
GGT
[ENA]
¡û
>W1910239164
FPMV01000203
Chlamydiota
Chlamydia abortus 162STDY5437302 [FPMV]
956
885
-
Thr
GGT
[ENA]
¡û
>W1910270411
FQLG01000001
Chlamydiota
Chlamydia abortus 09_05 [FQLG]
688818
688889
+
Thr
GGT
[ENA]
¡û
>W1910270696
FQLM01000001
Chlamydiota
Chlamydia abortus 15a [FQLM]
90252
90181
-
Thr
GGT
[ENA]
¡û
>W1910270721
FQLN01000001
Chlamydiota
Chlamydia abortus 09_02 [FQLN]
684464
684535
+
Thr
GGT
[ENA]
¡û
>W1910270827
FQLP01000001
Chlamydiota
Chlamydia abortus 162STDY5437298 [FQLP]
1050144
1050215
+
Thr
GGT
[ENA]
¡û
>W1910280531
FQSX01000001
Chlamydiota
Chlamydia abortus 10DC89 [FQSX]
90253
90182
-
Thr
GGT
[ENA]
¡û
>W1910280569
FQSY01000001
Chlamydiota
Chlamydia abortus 10DC87 [FQSY]
90254
90183
-
Thr
GGT
[ENA]
¡û
>W1910280656
FQTA01000001
Chlamydiota
Chlamydia abortus 10DC90 [FQTA]
90250
90179
-
Thr
GGT
[ENA]
¡û
>W1910280670
FQTB01000001
Chlamydiota
Chlamydia abortus 03DC34 [FQTB]
684570
684641
+
Thr
GGT
[ENA]
¡û
>W1910281310
FQTM01000018
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
90301
90230
-
Thr
GGT
[ENA]
¡û
>W1910282666
FRDP01000001
Chlamydiota
Chlamydia abortus 09DC76 [FRDP]
684463
684534
+
Thr
GGT
[ENA]
¡û
>C141003393
CP004033
Chlamydiota
Chlamydia pecorum PV3056/3 [CP004033]
762238
762167
-
Thr
GGT
[Ensembl]
¡û
>C141003431
CP004034
Chlamydiota
Chlamydia pecorum W73 [CP004034]
764168
764097
-
Thr
GGT
[Ensembl]
¡û
>C141003469
CP004035
Chlamydiota
Chlamydia pecorum P787 [CP004035]
764031
763960
-
Thr
GGT
[Ensembl]
¡û
>W1911405172
NWQK01000001
Chlamydiota
Candidatus Chlamydia corallus corallus G3/2742-324 [NWQK]
156700
156629
-
Thr
GGT
[ENA]
¡û
>W1810176426
PJPX01000003
Chlamydiota
Chlamydia psittaci 10652_placenta [PJPX]
90629
90558
-
Thr
GGT
[ENA]
¡û
>W1810176490
PJPY01000007
Chlamydiota
Chlamydia psittaci 9945_foetus [PJPY]
93137
93066
-
Thr
GGT
[ENA]
¡û
>W1810176560
PJQA01000014
Chlamydiota
Chlamydia psittaci 8882_placenta [PJQA]
91849
91778
-
Thr
GGT
[ENA]
¡û
>C151009336
CP006571
Chlamydiota
Chlamydia avium 10DC88 [CP006571]
522677
522606
-
Thr
GGT
[Ensembl]
¡û
>C151103214
LN554882
Chlamydiota
Chlamydia abortus AB7 [LN554882]
778768
778697
-
Thr
GGT
[Ensembl]
¡û
>C151104640
LN846995
Chlamydiota
Chlamydia pneumoniae [LN846995]
89670
89741
+
Thr
GGT
[Ensembl]
¡û
>C151104678
LN846996
Chlamydiota
Chlamydia pneumoniae [LN846996]
89652
89723
+
Thr
GGT
[Ensembl]
¡û
>C151104754
LN847221
Chlamydiota
Chlamydia pneumoniae [LN847221]
89648
89719
+
Thr
GGT
[Ensembl]
¡û
>C151104792
LN847257
Chlamydiota
Chlamydia pneumoniae [LN847257]
89652
89723
+
Thr
GGT
[Ensembl]
¡û
>C10103804
CP001713
Chlamydiota
Chlamydia pneumoniae LPCoLN [CP001713]
755915
755844
-
Thr
GGT
[Ensembl]
¡û
>C11105903
CP002608
Chlamydiota
Chlamydia pecorum E58 [CP002608]
1069851
1069780
-
Thr
GGT
[Ensembl]
¡û
>C11106079
CP002806
Chlamydiota
Chlamydia psittaci 02DC15 [CP002806]
806444
806373
-
Thr
GGT
[Ensembl]
¡û
>C11106117
CP002807
Chlamydiota
Chlamydia psittaci 08DC60 [CP002807]
806484
806413
-
Thr
GGT
[Ensembl]
¡û
>C11106155
CP002586
Chlamydiota
Chlamydia psittaci 6BC [CP002586]
805855
805784
-
Thr
GGT
[Ensembl]
¡û
>C11106193
CP002549
Chlamydiota
Chlamydia psittaci 6BC [CP002549]
805943
805872
-
Thr
GGT
[Ensembl]
¡û
>C11106231
CP002804
Chlamydiota
Chlamydia psittaci C19/98 [CP002804]
803656
803585
-
Thr
GGT
[Ensembl]
¡û
>C11116423
FR872580
Chlamydiota
Parachlamydia acanthamoebae UV-7 [FR872580]
2200267
2200194
-
Thr
GGT
[Ensembl]
¡û
>W1511302099
JPIH02000012
Chlamydiota
Chlamydia psittaci HJ [JPIH]
92912
92841
-
Thr
GGT
[ENA]
¡û
>W1511360566
JSAM01000081
Chlamydiota
Parachlamydia acanthamoebae OEW1 [JSAM]
15854
15781
-
Thr
GGT
[ENA]
¡û
>W11153106
AEZD01000003
Chlamydiota
Chlamydia psittaci Cal10 [AEZD]
95126
95055
-
Thr
GGT
[ENA]
¡û
>W11163112
AFHM01000003
Chlamydiota
Chlamydia abortus LLG [AFHM]
90488
90417
-
Thr
GGT
[ENA]
¡û
>C161091250
CP015840
Chlamydiota
Chlamydia gallinacea 08-1274/3 [CP015840]
86998
86927
-
Thr
GGT
[Ensembl]
¡û
>C161106383
LN847241
Chlamydiota
Chlamydia pneumoniae [LN847241]
89651
89722
+
Thr
GGT
[Ensembl]
¡û
>W1610003388
AFVL01000002
Chlamydiota
Chlamydia psittaci DD34 [AFVL]
91624
91553
-
Thr
GGT
[ENA]
¡û
>W1610003426
AFVM01000002
Chlamydiota
Chlamydia psittaci str. Frances [AFVM]
91711
91640
-
Thr
GGT
[ENA]
¡û
>W1610029346
AWXQ01000002
Chlamydiota
Chlamydia psittaci UGA [AWXQ]
91776
91705
-
Thr
GGT
[ENA]
¡û
>C131001459
CP002744
Chlamydiota
Chlamydia psittaci Mat116 [CP002744]
798406
798335
-
Thr
GGT
-
¡û
>C131006771
CP003790
Chlamydiota
Chlamydia psittaci 84/55 [CP003790]
806381
806310
-
Thr
GGT
[Ensembl]
¡û
>C131006885
CP003793
Chlamydiota
Chlamydia psittaci VS225 [CP003793]
792598
792527
-
Thr
GGT
[Ensembl]
¡û
>C131006923
CP003794
Chlamydiota
Chlamydia psittaci WS/RT/E30 [CP003794]
780677
780606
-
Thr
GGT
[Ensembl]
¡û
>C131006999
CP003796
Chlamydiota
Chlamydia psittaci WC [CP003796]
806620
806549
-
Thr
GGT
[Ensembl]
¡û
>C131007037
CP003797
Chlamydiota
Chlamydia psittaci CP3 [CP003797]
803551
803480
-
Thr
GGT
[Ensembl]
¡û
>C131020623
HF545614
Chlamydiota
Chlamydia psittaci 01DC12 [HF545614]
806144
806073
-
Thr
GGT
[Ensembl]
¡û
>W1610547715
JWHE01000002
Chlamydiota
Chlamydia pecorum [JWHE]
382214
382143
-
Thr
GGT
[ENA]
¡û
>W1610604870
LFRH01000005
Chlamydiota
Chlamydia pecorum [LFRH]
127884
127813
-
Thr
GGT
[ENA]
¡û
>W1610604949
LFRK01000001
Chlamydiota
Chlamydia pecorum [LFRK]
148471
148400
-
Thr
GGT
[ENA]
¡û
>W1610604987
LFRL01000001
Chlamydiota
Chlamydia pecorum [LFRL]
127872
127801
-
Thr
GGT
[ENA]
¡û
>W1710004020
AFVL01000002
Chlamydiota
Chlamydia psittaci DD34 [AFVL]
91624
91553
-
Thr
GGT
[ENA]
¡û
>W1710004058
AFVM01000002
Chlamydiota
Chlamydia psittaci str. Frances [AFVM]
91711
91640
-
Thr
GGT
[ENA]
¡û
>W1710026716
AWXQ01000002
Chlamydiota
Chlamydia psittaci UGA [AWXQ]
91776
91705
-
Thr
GGT
[ENA]
¡û
>W1710650960
JWHE01000002
Chlamydiota
Chlamydia pecorum [JWHE]
382214
382143
-
Thr
GGT
[ENA]
¡û
>W1710726313
LFRH01000005
Chlamydiota
Chlamydia pecorum [LFRH]
127884
127813
-
Thr
GGT
[ENA]
¡û
>W1710726392
LFRK01000001
Chlamydiota
Chlamydia pecorum [LFRK]
148471
148400
-
Thr
GGT
[ENA]
¡û
>W1710726430
LFRL01000001
Chlamydiota
Chlamydia pecorum [LFRL]
127872
127801
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK