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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.37318 (43 seq.)
>W1710860670
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1710867211
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>C171130522
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1431178
1431088
-
Ser
GGA
-
¡û
>WENV180022303
FTFY01000283
[FTFY] metagenome; soil
559
649
+
Ser
GGA
[ENA]
¡û
>WENV180026716
FTIU01038733
[FTIU] metagenome; soil
891
981
+
Ser
GGA
[ENA]
¡û
>WENV180029896
FTJL01015597
[FTJL] metagenome; soil
426
516
+
Ser
GGA
[ENA]
¡û
>WENV180271015
OBEQ012228349
[OBEQ] groundwater metagenome; groundwater
922
1012
+
Ser
GGA
[ENA]
¡û
>WENV170558852
CXWL01095715
[CXWL] groundwater metagenome; biofilm material
9108
9018
-
Ser
GGA
[ENA]
¡û
>WENV170559244
CXWL01115731
[CXWL] groundwater metagenome; biofilm material
2579
2666
+
Ser
GGA
[ENA]
¡û
>C181102668
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
2085836
2085926
+
Ser
GGA
-
¡û
>W1911572399
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1008324
1008234
-
Ser
GGA
[ENA]
¡û
>W1911802844
QYUP01000061
Betaproteobacteria
Massilia sp. K1S02-61 [QYUP]
5550
5460
-
Ser
GGA
[ENA]
¡û
>W2011182820
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1008324
1008234
-
Ser
GGA
[ENA]
¡û
>W2011344475
QYUP01000061
Betaproteobacteria
Massilia sp. K1S02-61 [QYUP]
5550
5460
-
Ser
GGA
[ENA]
¡û
>W2011353295
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
1520210
1520300
+
Ser
GGA
[ENA]
¡û
>W2012047554
VIVV01000016
Betaproteobacteria
Collimonas arenae 515 [VIVV]
87630
87720
+
Ser
GGA
[ENA]
¡û
>W2012144245
VTTH01000002
Betaproteobacteria
Oxalobacteraceae bacterium CHu64-6-4 [VTTH]
798695
798605
-
Ser
GGA
[ENA]
¡û
>W2012157050
VUYU01000011
Betaproteobacteria
Massilia sp. CCM 8692 [VUYU]
37006
37096
+
Ser
GGA
[ENA]
¡û
>W2012157315
VVIW01000003
Betaproteobacteria
Massilia sp. CCM 8693 [VVIW]
429457
429547
+
Ser
GGA
[ENA]
¡û
>W2012326316
WHJF01000023
Betaproteobacteria
Massilia sp. CCM 8694 [WHJF]
66523
66613
+
Ser
GGA
[ENA]
¡û
>W2012326396
WHJG01000007
Betaproteobacteria
Massilia sp. CCM 8695 [WHJG]
2070
1980
-
Ser
GGA
[ENA]
¡û
>W2012326509
WHJH01000099
Betaproteobacteria
Massilia sp. CCM 8733 [WHJH]
1508
1418
-
Ser
GGA
[ENA]
¡û
>W2012326578
WHJI01000051
Betaproteobacteria
Massilia sp. CCM 8734 [WHJI]
18237
18147
-
Ser
GGA
[ENA]
¡û
>W2012509427
WXXL01000035
Betaproteobacteria
PMB3(1) [WXXL]
122
32
-
Ser
GGA
[ENA]
¡û
>W2110463030
JAFBIL020000002
Betaproteobacteria
Massilia sp. R798 [JAFBIL]
47247
47337
+
Ser
GGA
[ENA]
¡û
>W2110566800
JAGQED010000030
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
26385
26295
-
Ser
GGA
[ENA]
¡û
>W2110566844
JAGQEE010000008
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
250410
250320
-
Ser
GGA
[ENA]
¡û
>W2110566919
JAGQEG010000057
Betaproteobacteria
Collimonas sp. RXD178 [JAGQEG]
6582
6672
+
Ser
GGA
[ENA]
¡û
>C211199755
CP065053
Betaproteobacteria
Massilia sp. CCM 8941 [CP065053]
3375896
3375986
+
Ser
GGA
-
¡û
>C231096025
CP063361
Betaproteobacteria
Massilia violaceinigra sipir [CP063361]
4138903
4138993
+
Ser
GGA
-
¡û
>C11105084
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3909016
3908926
-
Ser
GGA
[Ensembl]
¡û
>C161053605
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4376245
4376155
-
Ser
GGA
[Ensembl]
¡û
>C161053704
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4266836
4266746
-
Ser
GGA
[Ensembl]
¡û
>C161053804
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4343178
4343088
-
Ser
GGA
[Ensembl]
¡û
>W1610093123
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610163417
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1610723016
LMDB01000022
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
510238
510328
+
Ser
GGA
[ENA]
¡û
>W1610729557
LMIC01000002
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
179457
179367
-
Ser
GGA
[ENA]
¡û
>W1710096331
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710165084
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
2435001
2435091
+
Ser
GGA
[ENA]
¡û
>W1710556450
FOKF01000014
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
33623
33533
-
Ser
GGA
[ENA]
¡û
>W1710557545
FOLC01000031
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
37017
36927
-
Ser
GGA
[ENA]
¡û
>W1710564236
FOQI01000017
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
111999
111909
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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