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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.374778 (192 seq.)
>W1710808915
LKDZ01000008
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
180270
180196
-
Val
CAC
[ENA]
¡û
>W1710821620
LKTU01000004
Betaproteobacteria
Variovorax paradoxus [LKTU]
77714
77788
+
Val
CAC
[ENA]
¡û
>W1710821621
LKTU01000004
Betaproteobacteria
Variovorax paradoxus [LKTU]
168909
168835
-
Val
CAC
[ENA]
¡û
>W1710821682
LKTV01000027
Betaproteobacteria
Variovorax paradoxus [LKTV]
34616
34690
+
Val
CAC
[ENA]
¡û
>W1710821733
LKTW01000038
Betaproteobacteria
Variovorax paradoxus [LKTW]
33351
33277
-
Val
CAC
[ENA]
¡û
>W1710821786
LKTX01000020
Betaproteobacteria
Variovorax paradoxus [LKTX]
44057
43983
-
Val
CAC
[ENA]
¡û
>W1710821837
LKTY01000046
Betaproteobacteria
Variovorax paradoxus [LKTY]
21699
21625
-
Val
CAC
[ENA]
¡û
>W1710821893
LKTZ01000051
Betaproteobacteria
Variovorax paradoxus [LKTZ]
34598
34672
+
Val
CAC
[ENA]
¡û
>W1710860121
LMCQ01000002
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
123295
123369
+
Val
CAC
[ENA]
¡û
>W1710861790
LMDW01000020
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
292375
292449
+
Val
CAC
[ENA]
¡û
>W1710862502
LMEK01000026
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
40965
41039
+
Val
CAC
[ENA]
¡û
>W1710863084
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
985388
985462
+
Val
CAC
[ENA]
¡û
>W1710882266
LMTS01000004
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
80444
80370
-
Val
CAC
[ENA]
¡û
>W1711123818
LUJJ01000012
Betaproteobacteria
Variovorax boronicumulans [LUJJ]
479783
479709
-
Val
CAC
[ENA]
¡û
>W1711143364
LVHG01000054
Betaproteobacteria
Variovorax paradoxus [LVHG]
14849
14775
-
Val
CAC
[ENA]
¡û
>W1711250095
LYMK01000026
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
76044
76118
+
Val
CAC
[ENA]
¡û
>W1711259818
LYVO01000014
Betaproteobacteria
Variovorax sp. KK3 [LYVO]
91581
91655
+
Val
CAC
[ENA]
¡û
>W1711386521
MEFM01000059
Betaproteobacteria
Variovorax sp. SCN 67-85 [MEFM]
261052
261126
+
Val
CAC
[ENA]
¡û
>W1711387500
MEGR01000097
Betaproteobacteria
Variovorax sp. SCN 67-20 [MEGR]
491320
491246
-
Val
CAC
[ENA]
¡û
>W1711506609
MKWO01000014
Betaproteobacteria
Variovorax sp. 67-131 [MKWO]
261106
261180
+
Val
CAC
[ENA]
¡û
>W1711581685
MNUL01000005
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
1205
1279
+
Val
CAC
[ENA]
¡û
>W1711584011
MNXY01000005
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
4079
4005
-
Val
CAC
[ENA]
¡û
>W1711709059
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
931170
931244
+
Val
CAC
[ENA]
¡û
>W1711721734
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
502328
502254
-
Val
CAC
[ENA]
¡û
>C171091722
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1760285
1760359
+
Val
CAC
-
¡û
>W131174644
ARIP01000070
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
111625
111551
-
Val
CAC
[ENA]
¡û
>W131180363
ARNA01000050
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
839199
839125
-
Val
CAC
[ENA]
¡û
>C018603
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
2381770
2381844
+
Val
CAC
[Ensembl]
¡û
>WENV180027086
FTIV01216617
[FTIV] metagenome; soil
397
323
-
Val
CAC
[ENA]
¡û
>WENV180030257
FTJL01461858
[FTJL] metagenome; soil
89
163
+
Val
CAC
[ENA]
¡û
>w008226
AAJK01000018
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
78347
78276
-
Val
CAC
[ENA]
¡û
>WENV180271390
OBEQ012269535
[OBEQ] groundwater metagenome; groundwater
145
219
+
Val
CAC
[ENA]
¡û
>WENV180692410
OCZS010517936
[OCZS] soil metagenome; soil
225
299
+
Val
CAC
[ENA]
¡û
>WENV181364795
OFPD01000201
[OFPD] sediment metagenome; Lake sediment
2292
2218
-
Val
CAC
[ENA]
¡û
>WENV181364893
OFPF01000290
[OFPF] sediment metagenome; Lake sediment
877
803
-
Val
CAC
[ENA]
¡û
>WENV181365112
OFPJ01000902
[OFPJ] sediment metagenome; Lake sediment
257
183
-
Val
CAC
[ENA]
¡û
>W141170141
AXXF01000003
Betaproteobacteria
Variovorax sp. JGI 0001014-I04 [AXXF]
6148
6222
+
Val
CAC
[ENA]
¡û
>WENV183731305
PJTS01035208
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
218
144
-
Val
CAC
[ENA]
¡û
>WENV183735296
PJUA01009362
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
611
537
-
Val
CAC
[ENA]
¡û
>WENV183735619
PJUB01000219
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
21235
21309
+
Val
CAC
[ENA]
¡û
>WENV183736328
PJUC01000772
[PJUC] soil metagenome; Soil enriched on filter paper
2466
2540
+
Val
CAC
[ENA]
¡û
>WENV183741388
PJUG01000002
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
105067
105141
+
Val
CAC
[ENA]
¡û
>WENV183741900
PJUH01000003
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
709007
708933
-
Val
CAC
[ENA]
¡û
>WENV183743736
PJUJ01033811
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
163
237
+
Val
CAC
[ENA]
¡û
>WENV183746461
POYD01021268
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
1
75
+
Val
CAC
[ENA]
¡û
>WENV170556975
CXWL01017005
[CXWL] groundwater metagenome; biofilm material
12227
12301
+
Val
CAC
[ENA]
¡û
>WENV170559521
CXWL01127118
[CXWL] groundwater metagenome; biofilm material
3628
3702
+
Val
CAC
[ENA]
¡û
>WENV170639662
JFJP01005704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13786
13860
+
Val
CAC
[ENA]
¡û
>WENV170680925
LFEF01035379
[LFEF] freshwater metagenome; waterbloom
250
324
+
Val
CAC
[ENA]
¡û
>WENV170707735
LNAP01031671
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1506
1432
-
Val
CAC
[ENA]
¡û
>WENV170708168
LNAP01055025
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1
75
+
Val
CAC
[ENA]
¡û
>W09119939
ACEE01000036
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
16146
16072
-
Val
CAC
[ENA]
¡û
>WENV170961858
MLJW01002873
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1710
1636
-
Val
CAC
[ENA]
¡û
>WENV171003307
NNBT01004016
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
2899
2973
+
Val
CAC
[ENA]
¡û
>WENV171003576
NNBU01000555
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
24070
23996
-
Val
CAC
[ENA]
¡û
>WENV171003726
NNBV01000549
[NNBV] plant metagenome; symbiotic tissue sample KVS11
77248
77174
-
Val
CAC
[ENA]
¡û
>C181078493
CP023284
Betaproteobacteria
Variovorax boronicumulans J1 [CP023284]
4389883
4389809
-
Val
CAC
-
¡û
>C181159368
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
633134
633208
+
Val
CAC
-
¡û
>W141558065
JHVQ01000003
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
508701
508775
+
Val
CAC
[ENA]
¡û
>C141002546
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2458514
2458588
+
Val
CAC
[Ensembl]
¡û
>C141003916
CP004885
Betaproteobacteria
Candidatus Symbiobacter mobilis CR [CP004885]
20040
19966
-
Val
CAC
[Ensembl]
¡û
>W1910744107
MHZY01000166
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
6869
6943
+
Val
CAC
[ENA]
¡û
>W1910792812
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
394788
394862
+
Val
CAC
[ENA]
¡û
>C09111095
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
2293751
2293825
+
Val
CAC
[Ensembl]
¡û
>W1911496710
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4624479
4624405
-
Val
CAC
[ENA]
¡û
>W1911647364
QAJK01000124
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
21410
21336
-
Val
CAC
[ENA]
¡û
>W1911775306
QXMN01000002
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
299578
299504
-
Val
CAC
[ENA]
¡û
>W1810046168
NNBQ01000002
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
768125
768199
+
Val
CAC
[ENA]
¡û
>W1810046265
NNBR01000002
Betaproteobacteria
Variovorax sp. B2 [NNBR]
768137
768211
+
Val
CAC
[ENA]
¡û
>W1810072254
PEFF01000001
Betaproteobacteria
Variovorax sp. 54 [PEFF]
579211
579137
-
Val
CAC
[ENA]
¡û
>W1810192710
PKMT01000001
Betaproteobacteria
Variovorax sp. RO1 [PKMT]
2175661
2175735
+
Val
CAC
[ENA]
¡û
>W1810392052
PXZZ01000027
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
41538
41464
-
Val
CAC
[ENA]
¡û
>W1810486644
QAYA01000001
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
138818
138892
+
Val
CAC
[ENA]
¡û
>W1810577499
QEOH01000001
Betaproteobacteria
Variovorax sp. GV014 [QEOH]
235591
235665
+
Val
CAC
[ENA]
¡û
>W1810672515
QJTM01000001
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
138818
138892
+
Val
CAC
[ENA]
¡û
>W1810676083
QKLT01000001
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
138818
138892
+
Val
CAC
[ENA]
¡û
>W1810682452
QKUE01000001
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
138818
138892
+
Val
CAC
[ENA]
¡û
>W2010108339
BKDH01000001
Betaproteobacteria
Variovorax boronicumulans HAB-30 [BKDH]
1692047
1692121
+
Val
CAC
[ENA]
¡û
>W2010108377
BKDI01000001
Betaproteobacteria
Variovorax boronicumulans c24 [BKDI]
935767
935841
+
Val
CAC
[ENA]
¡û
>W2010308740
CABWKX010000018
Betaproteobacteria
Burkholderiales bacterium 8X [CABWKX]
594598
594524
-
Val
CAC
[ENA]
¡û
>W2010370509
CAHJWY010000747
Betaproteobacteria
Comamonadaceae bacterium [CAHJWY]
1053
979
-
Val
CAC
[ENA]
¡û
>W2010469827
JAAGOW010000001
Betaproteobacteria
Variovorax sp. WS11 [JAAGOW]
693214
693140
-
Val
CAC
[ENA]
¡û
>W2010609263
JABMJG010000009
Betaproteobacteria
Variovorax sp. SG517 [JABMJG]
316110
316184
+
Val
CAC
[ENA]
¡û
>W2010609279
JABMJH010000001
Betaproteobacteria
Variovorax sp. SG533 [JABMJH]
771316
771390
+
Val
CAC
[ENA]
¡û
>W2010640274
JABVZS010000142
Betaproteobacteria
Rhodoferax sp. 4810 [JABVZS]
8568
8494
-
Val
CAC
[ENA]
¡û
>W2010721663
JACIBG010000001
Betaproteobacteria
Variovorax sp. BK613 [JACIBG]
135254
135328
+
Val
CAC
[ENA]
¡û
>W2010721984
JACIBM010000003
Betaproteobacteria
Variovorax sp. BK658 [JACIBM]
448167
448241
+
Val
CAC
[ENA]
¡û
>W2010727650
JACIFZ010000002
Betaproteobacteria
Variovorax guangxiensis 34/80 [JACIFZ]
1431440
1431366
-
Val
CAC
[ENA]
¡û
>W2010782018
LMUW01000024
Betaproteobacteria
Xenophilus sp. L33 [LMUW]
113050
113124
+
Val
CAC
[ENA]
¡û
>W2010802565
LZZW01000031
Betaproteobacteria
Variovorax sp. UMC13 [LZZW]
123601
123527
-
Val
CAC
[ENA]
¡û
>W2010877539
MHZY01000166
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
6869
6943
+
Val
CAC
[ENA]
¡û
>W2010901274
MRCN01000002
Betaproteobacteria
Variovorax boronicumulans ACN3 [MRCN]
394788
394862
+
Val
CAC
[ENA]
¡û
>W2011157614
OCMW01000001
Betaproteobacteria
Variovorax sp. YR752 [OCMW]
4624479
4624405
-
Val
CAC
[ENA]
¡û
>W2011235348
QAJK01000124
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
21410
21336
-
Val
CAC
[ENA]
¡û
>W2011328863
QXMN01000002
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
299578
299504
-
Val
CAC
[ENA]
¡û
>W2011482820
RQXU01000003
Betaproteobacteria
Variovorax sp. T529 [RQXU]
153198
153272
+
Val
CAC
[ENA]
¡û
>W2011494445
RWKH01000008
Betaproteobacteria
Variovorax sp. DXTD-1 [RWKH]
104850
104924
+
Val
CAC
[ENA]
¡û
>W2011494495
RWKI01000007
Betaproteobacteria
Variovorax sp. MHTC-1 [RWKI]
200124
200198
+
Val
CAC
[ENA]
¡û
>W2011495745
RXFQ01000009
Betaproteobacteria
Variovorax sp. 502 [RXFQ]
208229
208155
-
Val
CAC
[ENA]
¡û
>W2011495793
RXFR01000006
Betaproteobacteria
Variovorax sp. 553 [RXFR]
95789
95715
-
Val
CAC
[ENA]
¡û
>W2011495845
RXFS01000006
Betaproteobacteria
Variovorax sp. 679 [RXFS]
426646
426720
+
Val
CAC
[ENA]
¡û
>W2011495870
RXFT01000001
Betaproteobacteria
Variovorax guangxiensis DSM 27352 [RXFT]
348566
348640
+
Val
CAC
[ENA]
¡û
>W2011496211
RXHT01000006
Betaproteobacteria
Variovorax sp. 369 [RXHT]
223019
222945
-
Val
CAC
[ENA]
¡û
>W2011498456
RXOE01000001
Betaproteobacteria
Variovorax gossypii DSM 100435 [RXOE]
1184887
1184813
-
Val
CAC
[ENA]
¡û
>W2011539098
SCNM01000009
Betaproteobacteria
Variovorax sp. 3P27G3 [SCNM]
5024
4950
-
Val
CAC
[ENA]
¡û
>W2011577734
SGWS01000024
Betaproteobacteria
Variovorax sp. BK460 [SGWS]
22219
22145
-
Val
CAC
[ENA]
¡û
>W2011578846
SGXQ01000001
Betaproteobacteria
Variovorax sp. BK119 [SGXQ]
2205885
2205959
+
Val
CAC
[ENA]
¡û
>W2011619658
SLVE01000003
Betaproteobacteria
Variovorax sp. BT01 [SLVE]
437268
437342
+
Val
CAC
[ENA]
¡û
>W2011620193
SLVO01000001
Betaproteobacteria
Variovorax sp. BK151 [SLVO]
419918
419992
+
Val
CAC
[ENA]
¡û
>W2011624454
SLYJ01000001
Betaproteobacteria
Variovorax sp. GV051 [SLYJ]
138818
138892
+
Val
CAC
[ENA]
¡û
>W2011625434
SLYZ01000001
Betaproteobacteria
Variovorax sp. GV008 [SLYZ]
235591
235665
+
Val
CAC
[ENA]
¡û
>W2011626051
SLZJ01000005
Betaproteobacteria
Variovorax sp. BK370 [SLZJ]
185252
185326
+
Val
CAC
[ENA]
¡û
>W2011753106
SZVI01000008
Betaproteobacteria
Rhodoferax sp. BLA1 [SZVI]
54361
54287
-
Val
CAC
[ENA]
¡û
>W2011971352
VCCD02000006
Betaproteobacteria
Variovorax sp. KBS0712 [VCCD]
41482
41556
+
Val
CAC
[ENA]
¡û
>W2012046920
VIVL01000004
Betaproteobacteria
Variovorax sp. T529 [VIVL]
225593
225667
+
Val
CAC
[ENA]
¡û
>W2012048054
VIWE01000002
Betaproteobacteria
Variovorax sp. 1180 [VIWE]
212919
212993
+
Val
CAC
[ENA]
¡û
>W2110079448
CAIGKF010000008
Betaproteobacteria
Variovorax paradoxus [CAIGKF]
166937
167011
+
Val
CAC
[ENA]
¡û
>W2110134448
JAAAFX010000009
Betaproteobacteria
Variovorax boronicumulans Xaverov 112 [JAAAFX]
363040
363114
+
Val
CAC
[ENA]
¡û
>W2110161234
JAAVVD010000003
Betaproteobacteria
Variovorax sp. dw_954 [JAAVVD]
15625
15699
+
Val
CAC
[ENA]
¡û
>W2110268702
JACVBS010000026
Betaproteobacteria
Variovorax sp. VRV01 [JACVBS]
22304
22230
-
Val
CAC
[ENA]
¡û
>W2110408632
JAEFCB010000005
Betaproteobacteria
Variovorax sp. IB41 [JAEFCB]
290728
290802
+
Val
CAC
[ENA]
¡û
>W2110457182
JAEVYQ010000471
Betaproteobacteria
Variovorax paradoxus BFB1_13 [JAEVYQ]
13253
13179
-
Val
CAC
[ENA]
¡û
>W2110541681
JAGGNU010000009
Betaproteobacteria
Variovorax paradoxus ISL-3 [JAGGNU]
25865
25939
+
Val
CAC
[ENA]
¡û
>W2110541738
JAGGNV010000035
Betaproteobacteria
Variovorax paradoxus ISL-79 [JAGGNV]
76816
76890
+
Val
CAC
[ENA]
¡û
>W2110541785
JAGGNW010000011
Betaproteobacteria
Variovorax paradoxus ISL-81 [JAGGNW]
399598
399524
-
Val
CAC
[ENA]
¡û
>W2110600551
JAHFZF010000001
Betaproteobacteria
Rhodoferax sp. U11-2br [JAHFZF]
73515
73441
-
Val
CAC
[ENA]
¡û
>C201162718
CP045644
Betaproteobacteria
Variovorax paradoxus 5C-2 [CP045644]
4754349
4754423
+
Val
CAC
-
¡û
>C201306949
LR594659
Betaproteobacteria
Variovorax sp. PBL-H6 [LR594659]
4097500
4097426
-
Val
CAC
-
¡û
>C201307053
LR594671
Betaproteobacteria
Variovorax sp. PBL-E5 [LR594671]
2034112
2034186
+
Val
CAC
-
¡û
>C201307127
LR594675
Betaproteobacteria
Variovorax sp. PBS-H4 [LR594675]
4312141
4312067
-
Val
CAC
-
¡û
>C211016751
AP024238
Betaproteobacteria
Rhodoferax sp. MIZ03 [AP024238]
2724385
2724311
-
Val
CAC
-
¡û
>C211067356
CP046508
Betaproteobacteria
Variovorax sp. RKNM96 [CP046508]
4371030
4370956
-
Val
CAC
-
¡û
>C211132281
CP060295
Betaproteobacteria
Variovorax sp. PAMC26660 [CP060295]
5648773
5648847
+
Val
CAC
-
¡û
>C211157208
CP062121
Betaproteobacteria
Variovorax sp. 38R [CP062121]
3929071
3928997
-
Val
CAC
-
¡û
>C211172903
CP063166
Betaproteobacteria
Variovorax paradoxus VAI-C [CP063166]
2696121
2696195
+
Val
CAC
-
¡û
>C211274670
CP070343
Betaproteobacteria
Variovorax sp. PDNC026 [CP070343]
4623481
4623407
-
Val
CAC
-
¡û
>W2110734441
JAJCTH010000001
Betaproteobacteria
Rhodoferax sp. U2-2l [JAJCTH]
357446
357520
+
Val
CAC
[ENA]
¡û
>W2110748877
MOWM01000014
Betaproteobacteria
Variovorax sp. E3 [MOWM]
16856
16782
-
Val
CAC
[ENA]
¡û
>C231461202
CP102931
Betaproteobacteria
Variovorax paradoxus JBCE486 [CP102931]
3989542
3989468
-
Val
CAC
-
¡û
>C241111925
CP046622
Betaproteobacteria
Variovorax paradoxus CSUSB [CP046622]
2411422
2411496
+
Val
CAC
-
¡û
>W2130011240
JAATOM010000030
Betaproteobacteria
Variovorax sp. dw_308 [JAATOM]
48509
48435
-
Val
CAC
[ENA]
¡û
>C241251411
CP123990
Betaproteobacteria
Variovorax paradoxus MGMM5 [CP123990]
1771410
1771484
+
Val
CAC
-
¡û
>C241342612
CP138513
Betaproteobacteria
Variovorax paradoxus SPNA7 [CP138513]
2624308
2624382
+
Val
CAC
-
¡û
>C241342656
CP138515
Betaproteobacteria
Variovorax paradoxus 2u118 [CP138515]
2315829
2315903
+
Val
CAC
-
¡û
>C241380128
LR594662
Betaproteobacteria
Variovorax sp. RA8 [LR594662]
4334133
4334059
-
Val
CAC
-
¡û
>C241380144
LR594666
Betaproteobacteria
Variovorax sp. SRS16 [LR594666]
1957408
1957482
+
Val
CAC
-
¡û
>C241380219
LR594689
Betaproteobacteria
Variovorax sp. WDL1 [LR594689]
1046719
1046645
-
Val
CAC
-
¡û
>W2130043359
NRRK01000014
Betaproteobacteria
Rhodoferax fermentans DSM 10138 [NRRK]
17631
17705
+
Val
CAC
[ENA]
¡û
>W1511352985
JROV01001476
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
11440
11514
+
Val
CAC
[ENA]
¡û
>C11123605
CP002417
Betaproteobacteria
Variovorax paradoxus EPS [CP002417]
4039122
4039048
-
Val
CAC
[Ensembl]
¡û
>W1511508911
JXQQ01000007
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
134925
134999
+
Val
CAC
[ENA]
¡û
>W1511555000
JZWI01000014
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
148165
148091
-
Val
CAC
[ENA]
¡û
>C161073198
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
171827
171753
-
Val
CAC
[Ensembl]
¡û
>W1610047761
BBDP01001046
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
1214
1288
+
Val
CAC
[ENA]
¡û
>W1610072149
BCUS01000022
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
45307
45381
+
Val
CAC
[ENA]
¡û
>W1610072197
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
351822
351748
-
Val
CAC
[ENA]
¡û
>W1610072250
BCUU01000019
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
4558
4484
-
Val
CAC
[ENA]
¡û
>W121084945
AKIW01000005
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
32939
33013
+
Val
CAC
[ENA]
¡û
>W1610685582
LKTU01000004
Betaproteobacteria
Variovorax paradoxus [LKTU]
77714
77788
+
Val
CAC
[ENA]
¡û
>W1610685583
LKTU01000004
Betaproteobacteria
Variovorax paradoxus [LKTU]
168909
168835
-
Val
CAC
[ENA]
¡û
>W1610685644
LKTV01000027
Betaproteobacteria
Variovorax paradoxus [LKTV]
34616
34690
+
Val
CAC
[ENA]
¡û
>W1610685695
LKTW01000038
Betaproteobacteria
Variovorax paradoxus [LKTW]
33351
33277
-
Val
CAC
[ENA]
¡û
>W1610685748
LKTX01000020
Betaproteobacteria
Variovorax paradoxus [LKTX]
44057
43983
-
Val
CAC
[ENA]
¡û
>W1610685799
LKTY01000046
Betaproteobacteria
Variovorax paradoxus [LKTY]
21699
21625
-
Val
CAC
[ENA]
¡û
>W1610685855
LKTZ01000051
Betaproteobacteria
Variovorax paradoxus [LKTZ]
34598
34672
+
Val
CAC
[ENA]
¡û
>W1610722467
LMCQ01000002
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
123295
123369
+
Val
CAC
[ENA]
¡û
>W1610724136
LMDW01000020
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
292375
292449
+
Val
CAC
[ENA]
¡û
>W1610724848
LMEK01000026
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
40965
41039
+
Val
CAC
[ENA]
¡û
>W1610725430
LMEV01000017
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
985388
985462
+
Val
CAC
[ENA]
¡û
>W1610744192
LMTS01000004
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
80444
80370
-
Val
CAC
[ENA]
¡û
>W1610954372
LVHG01000054
Betaproteobacteria
Variovorax paradoxus [LVHG]
14849
14775
-
Val
CAC
[ENA]
¡û
>W1710044271
BBDP01001046
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
1214
1288
+
Val
CAC
[ENA]
¡û
>W1710069351
BCUS01000022
Betaproteobacteria
Variovorax boronicumulans NBRC 103145 [BCUS]
45307
45381
+
Val
CAC
[ENA]
¡û
>W1710069399
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
351822
351748
-
Val
CAC
[ENA]
¡û
>W1710069452
BCUU01000019
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
4558
4484
-
Val
CAC
[ENA]
¡û
>W1710506173
FMUJ01000001
Betaproteobacteria
Variovorax sp. EL159 [FMUJ]
1185685
1185759
+
Val
CAC
[ENA]
¡û
>W1710512946
FMZU01000011
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
178319
178245
-
Val
CAC
[ENA]
¡û
>W1710517929
FNDR01000001
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
96347
96273
-
Val
CAC
[ENA]
¡û
>W1710530020
FNOL01000003
Betaproteobacteria
Variovorax sp. YR634 [FNOL]
152366
152292
-
Val
CAC
[ENA]
¡û
>W1710531371
FNPM01000006
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
229369
229443
+
Val
CAC
[ENA]
¡û
>W1710538151
FNUI01000009
Betaproteobacteria
Variovorax sp. NFACC28 [FNUI]
142775
142701
-
Val
CAC
[ENA]
¡û
>W1710539569
FNVM01000009
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
217789
217863
+
Val
CAC
[ENA]
¡û
>W1710542724
FNZJ01000007
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
190917
190991
+
Val
CAC
[ENA]
¡û
>W1710545302
FOBJ01000008
Betaproteobacteria
Variovorax sp. YR750 [FOBJ]
117826
117752
-
Val
CAC
[ENA]
¡û
>W1710554308
FOII01000007
Betaproteobacteria
Variovorax sp. OV084 [FOII]
93866
93940
+
Val
CAC
[ENA]
¡û
>W1710557154
FOKS01000009
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
217781
217855
+
Val
CAC
[ENA]
¡û
>W1710558165
FOLP01000007
Betaproteobacteria
Variovorax sp. OK212 [FOLP]
191013
191087
+
Val
CAC
[ENA]
¡û
>W1710562261
FOOV01000006
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
217790
217864
+
Val
CAC
[ENA]
¡û
>W1710569257
FOUG01000005
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
76531
76457
-
Val
CAC
[ENA]
¡û
>W1710571867
FOWG01000003
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
136545
136471
-
Val
CAC
[ENA]
¡û
>W1710572108
FOWL01000001
Betaproteobacteria
Variovorax sp. OK605 [FOWL]
900252
900178
-
Val
CAC
[ENA]
¡û
>W1710573273
FOXJ01000001
Betaproteobacteria
Variovorax sp. 770b2 [FOXJ]
909387
909461
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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