This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.376283 (81 seq.)
>W131181271
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
286960
286886
-
Glu
TTC
[ENA]
¡û
>W131181272
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
286601
286527
-
Glu
TTC
[ENA]
¡û
>W131181273
ARNT01000029
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
286431
286357
-
Glu
TTC
[ENA]
¡û
>WENV180021628
FTEX01000075
[FTEX] metagenome; soil
2440
2366
-
Glu
TTC
[ENA]
¡û
>WENV180022844
FTGV01000424
[FTGV] metagenome; soil
463
389
-
Glu
TTC
[ENA]
¡û
>WENV180027085
FTIV01215992
[FTIV] metagenome; soil
439
365
-
Glu
TTC
[ENA]
¡û
>WENV180028191
FTJA01002742
[FTJA] metagenome; soil
1058
1132
+
Glu
TTC
[ENA]
¡û
>WENV180031381
FTJO01041029
[FTJO] metagenome; soil
537
611
+
Glu
TTC
[ENA]
¡û
>WENV180031970
FTJU01002218
[FTJU] metagenome; soil
29563
29489
-
Glu
TTC
[ENA]
¡û
>WENV180031971
FTJU01002218
[FTJU] metagenome; soil
28704
28630
-
Glu
TTC
[ENA]
¡û
>W2010102710
BJXC01000020
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [BJXC]
79974
80046
+
Glu
TTC
[ENA]
¡û
>W2010102711
BJXC01000023
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [BJXC]
95
167
+
Glu
TTC
[ENA]
¡û
>W2010599608
JABFOQ010000010
Bacteroidota
Empedobacter stercoris ES202 [JABFOQ]
32140
32068
-
Glu
TTC
[ENA]
¡û
>W2010599609
JABFOQ010000010
Bacteroidota
Empedobacter stercoris ES202 [JABFOQ]
31776
31704
-
Glu
TTC
[ENA]
¡û
>W2010599610
JABFOQ010000010
Bacteroidota
Empedobacter stercoris ES202 [JABFOQ]
31608
31536
-
Glu
TTC
[ENA]
¡û
>W2010750713
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
136389
136317
-
Glu
TTC
[ENA]
¡û
>W2010750714
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
136031
135959
-
Glu
TTC
[ENA]
¡û
>W2010750715
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
135861
135789
-
Glu
TTC
[ENA]
¡û
>W2011410184
RDOJ01000004
Bacteroidota
Flavobacteriaceae bacterium YIM 102668 [RDOJ]
195923
195995
+
Glu
TTC
[ENA]
¡û
>W2011410185
RDOJ01000004
Bacteroidota
Flavobacteriaceae bacterium YIM 102668 [RDOJ]
196298
196370
+
Glu
TTC
[ENA]
¡û
>W2011410186
RDOJ01000004
Bacteroidota
Flavobacteriaceae bacterium YIM 102668 [RDOJ]
196475
196547
+
Glu
TTC
[ENA]
¡û
>W2011423642
RHPN01000002
Bacteroidota
Empedobacter falsenii WF_350 [RHPN]
140264
140336
+
Glu
TTC
[ENA]
¡û
>W2011423643
RHPN01000002
Bacteroidota
Empedobacter falsenii WF_350 [RHPN]
140622
140694
+
Glu
TTC
[ENA]
¡û
>W2011423644
RHPN01000002
Bacteroidota
Empedobacter falsenii WF_350 [RHPN]
188016
188088
+
Glu
TTC
[ENA]
¡û
>W2011423701
RHPO01000002
Bacteroidota
Empedobacter falsenii WF_348 [RHPO]
140264
140336
+
Glu
TTC
[ENA]
¡û
>W2011423702
RHPO01000002
Bacteroidota
Empedobacter falsenii WF_348 [RHPO]
140622
140694
+
Glu
TTC
[ENA]
¡û
>W2011423703
RHPO01000002
Bacteroidota
Empedobacter falsenii WF_348 [RHPO]
188016
188088
+
Glu
TTC
[ENA]
¡û
>W2011679893
SRPE01000003
Bacteroidota
Empedobacter sp. MRS2 [SRPE]
155046
155118
+
Glu
TTC
[ENA]
¡û
>W2011679894
SRPE01000003
Bacteroidota
Empedobacter sp. MRS2 [SRPE]
155408
155480
+
Glu
TTC
[ENA]
¡û
>W2011679895
SRPE01000003
Bacteroidota
Empedobacter sp. MRS2 [SRPE]
155576
155648
+
Glu
TTC
[ENA]
¡û
>W2011821596
UFXS01000001
Bacteroidota
Empedobacter falsenii NCTC13456 [UFXS]
351280
351208
-
Glu
TTC
[ENA]
¡û
>W2011821597
UFXS01000001
Bacteroidota
Empedobacter falsenii NCTC13456 [UFXS]
350922
350850
-
Glu
TTC
[ENA]
¡û
>W2011821598
UFXS01000001
Bacteroidota
Empedobacter falsenii NCTC13456 [UFXS]
350753
350681
-
Glu
TTC
[ENA]
¡û
>W2110022648
BMFL01000004
Bacteroidota
Chishuiella changwenlii CGMCC 1.12707 [BMFL]
30971
31043
+
Glu
TTC
[ENA]
¡û
>W2110022649
BMFL01000004
Bacteroidota
Chishuiella changwenlii CGMCC 1.12707 [BMFL]
31329
31401
+
Glu
TTC
[ENA]
¡û
>W2110022650
BMFL01000004
Bacteroidota
Chishuiella changwenlii CGMCC 1.12707 [BMFL]
31489
31561
+
Glu
TTC
[ENA]
¡û
>W2110140951
JAAGKM010000005
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
46372
46444
+
Glu
TTC
[ENA]
¡û
>W2110140952
JAAGKM010000005
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
46730
46802
+
Glu
TTC
[ENA]
¡û
>W2110140953
JAAGKM010000005
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
46900
46972
+
Glu
TTC
[ENA]
¡û
>W2110285647
JACXZB010000004
Bacteroidota
Empedobacter stercoris ES180 [JACXZB]
93253
93325
+
Glu
TTC
[ENA]
¡û
>W2110285648
JACXZB010000004
Bacteroidota
Empedobacter stercoris ES180 [JACXZB]
93616
93688
+
Glu
TTC
[ENA]
¡û
>W2110285649
JACXZB010000004
Bacteroidota
Empedobacter stercoris ES180 [JACXZB]
93785
93857
+
Glu
TTC
[ENA]
¡û
>W2110285739
JACXZC010000021
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
29875
29803
-
Glu
TTC
[ENA]
¡û
>W2110285740
JACXZC010000021
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
29513
29441
-
Glu
TTC
[ENA]
¡û
>W2110285741
JACXZC010000021
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
29344
29272
-
Glu
TTC
[ENA]
¡û
>W2110286641
JACXZR010000015
Bacteroidota
Empedobacter stercoris ES182 [JACXZR]
45911
45983
+
Glu
TTC
[ENA]
¡û
>W2110286642
JACXZR010000015
Bacteroidota
Empedobacter stercoris ES182 [JACXZR]
46272
46344
+
Glu
TTC
[ENA]
¡û
>W2110286643
JACXZR010000015
Bacteroidota
Empedobacter stercoris ES182 [JACXZR]
46441
46513
+
Glu
TTC
[ENA]
¡û
>W2110316138
JADGIK010000006
Bacteroidota
Faecalibacter sp. WQ 117 [JADGIK]
243245
243317
+
Glu
TTC
[ENA]
¡û
>W2110316139
JADGIK010000006
Bacteroidota
Faecalibacter sp. WQ 117 [JADGIK]
243606
243678
+
Glu
TTC
[ENA]
¡û
>W2110316140
JADGIK010000006
Bacteroidota
Faecalibacter sp. WQ 117 [JADGIK]
243771
243843
+
Glu
TTC
[ENA]
¡û
>W2110683342
JAIKTW010000006
Bacteroidota
Empedobacter falsenii B4b2P8686 [JAIKTW]
54152
54224
+
Glu
TTC
[ENA]
¡û
>W2110683343
JAIKTW010000006
Bacteroidota
Empedobacter falsenii B4b2P8686 [JAIKTW]
54510
54582
+
Glu
TTC
[ENA]
¡û
>W2110683344
JAIKTW010000006
Bacteroidota
Empedobacter falsenii B4b2P8686 [JAIKTW]
54679
54751
+
Glu
TTC
[ENA]
¡û
>C201090717
CP040908
Bacteroidota
Empedobacter falsenii 1681-1 [CP040908]
136389
136317
-
Glu
TTC
-
¡û
>C201090718
CP040908
Bacteroidota
Empedobacter falsenii 1681-1 [CP040908]
136031
135959
-
Glu
TTC
-
¡û
>C201090719
CP040908
Bacteroidota
Empedobacter falsenii 1681-1 [CP040908]
135861
135789
-
Glu
TTC
-
¡û
>C201136066
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
1170754
1170826
+
Glu
TTC
-
¡û
>C201136067
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
1171113
1171185
+
Glu
TTC
-
¡û
>C201136068
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
1171283
1171355
+
Glu
TTC
-
¡û
>C211094270
CP053698
Bacteroidota
Empedobacter stercoris ES183 [CP053698]
2667966
2668038
+
Glu
TTC
-
¡û
>C211094271
CP053698
Bacteroidota
Empedobacter stercoris ES183 [CP053698]
2668327
2668399
+
Glu
TTC
-
¡û
>C211094272
CP053698
Bacteroidota
Empedobacter stercoris ES183 [CP053698]
2668496
2668568
+
Glu
TTC
-
¡û
>C211314253
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
1253959
1254031
+
Glu
TTC
-
¡û
>C211314254
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
1254333
1254405
+
Glu
TTC
-
¡û
>C211314255
CP072842
Bacteroidota
Flavobacteriaceae bacterium ZY171143 [CP072842]
1254509
1254581
+
Glu
TTC
-
¡û
>C231486770
CP104209
Bacteroidota
Empedobacter stercoris SCVM0123 [CP104209]
1765781
1765709
-
Glu
TTC
-
¡û
>C231486771
CP104209
Bacteroidota
Empedobacter stercoris SCVM0123 [CP104209]
1765419
1765347
-
Glu
TTC
-
¡û
>C231486772
CP104209
Bacteroidota
Empedobacter stercoris SCVM0123 [CP104209]
1765250
1765178
-
Glu
TTC
-
¡û
>C241016823
CP013210
Bacteroidota
Empedobacter brevis BCLYD2 [CP013210]
828497
828569
+
Glu
TTC
-
¡û
>C241016824
CP013210
Bacteroidota
Empedobacter brevis BCLYD2 [CP013210]
828856
828928
+
Glu
TTC
-
¡û
>C241016825
CP013210
Bacteroidota
Empedobacter brevis BCLYD2 [CP013210]
829025
829097
+
Glu
TTC
-
¡û
>C241359037
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
1198409
1198481
+
Glu
TTC
-
¡û
>C241359038
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
1198785
1198857
+
Glu
TTC
-
¡û
>C241359039
CP141062
Bacteroidota
Faecalibacter sp. LW9 [CP141062]
1198956
1199028
+
Glu
TTC
-
¡û
>W1511391174
JSYQ01000013
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
84247
84321
+
Glu
TTC
[ENA]
¡û
>W1511391175
JSYQ01000013
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
84605
84679
+
Glu
TTC
[ENA]
¡û
>W1511391176
JSYQ01000013
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
84775
84849
+
Glu
TTC
[ENA]
¡û
>W1710590801
FRBH01000008
Bacteroidota
Chishuiella changwenlii [FRBH]
161521
161447
-
Glu
TTC
[ENA]
¡û
>W1710590802
FRBH01000008
Bacteroidota
Chishuiella changwenlii [FRBH]
161163
161089
-
Glu
TTC
[ENA]
¡û
>W1710590803
FRBH01000008
Bacteroidota
Chishuiella changwenlii [FRBH]
161003
160929
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK