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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.377038 (107 seq.)
>W1710889763
LNBC01000034
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
6889
6815
-
Thr
GGT
[ENA]
¡û
>W1710893546
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
58262
58336
+
Thr
GGT
[ENA]
¡û
>W1711511629
MLCO01000373
Alphaproteobacteria
Pseudoroseomonas deserti M3 [MLCO]
1366
1440
+
Thr
GGT
[ENA]
¡û
>W1712104619
NIPW01000006
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
23331
23405
+
Thr
GGT
[ENA]
¡û
>W1712104675
NIPX01000007
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
20462
20536
+
Thr
GGT
[ENA]
¡û
>W131186353
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
2599600
2599674
+
Thr
GGT
[ENA]
¡û
>W131224015
AUCM01000004
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
377199
377125
-
Thr
GGT
[ENA]
¡û
>w014848
AAOT01000012
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
90311
90235
-
Thr
GGT
[ENA]
¡û
>WENV180018066
FSYC01000112
[FSYC] metagenome; soil
1715
1789
+
Thr
GGT
[ENA]
¡û
>WENV180018599
FSZX01000018
[FSZX] metagenome; soil
4171
4245
+
Thr
GGT
[ENA]
¡û
>WENV180282769
OBIC01004105
[OBIC] beach sand metagenome; beach sand
1392
1466
+
Thr
GGT
[ENA]
¡û
>WENV180309867
OBJS01065762
[OBJS] beach sand metagenome; beach sand
374
300
-
Thr
GGT
[ENA]
¡û
>W141082086
ATSX01000005
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
32641
32567
-
Thr
GGT
[ENA]
¡û
>WENV181162554
OEIO01000685
[OEIO] marine metagenome; sea ice
2466
2540
+
Thr
GGT
[ENA]
¡û
>WENV181324819
OFLH01012140
[OFLH] marine metagenome; sea ice
211
137
-
Thr
GGT
[ENA]
¡û
>WENV181407321
OGCG01017313
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
886
812
-
Thr
GGT
[ENA]
¡û
>W141260953
CCAO010000012
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
51495
51421
-
Thr
GGT
[ENA]
¡û
>WENV183670126
ORJL010911062
[ORJL] groundwater metagenome; groundwater
1990
2064
+
Thr
GGT
[ENA]
¡û
>WENV183672087
ORJL011134730
[ORJL] groundwater metagenome; groundwater
76
2
-
Thr
GGT
[ENA]
¡û
>WENV170003668
AGTN01412765
[AGTN] bioreactor metagenome; poplar biomass
109
35
-
Thr
GGT
[ENA]
¡û
>WENV170406005
CEUG01257670
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
106
180
+
Thr
GGT
[ENA]
¡û
>WENV170553155
CXWK01009287
[CXWK] wastewater metagenome; activated sludge
3507
3433
-
Thr
GGT
[ENA]
¡û
>WENV170565886
FKKE01001827
[FKKE] freshwater metagenome; freshwater
8973
8899
-
Thr
GGT
[ENA]
¡û
>WENV170710240
LNFM01001357
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27555
27481
-
Thr
GGT
[ENA]
¡û
>WENV170712608
LNFM01015441
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6126
6052
-
Thr
GGT
[ENA]
¡û
>WENV170961947
MRWF01000006
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
93453
93527
+
Thr
GGT
[ENA]
¡û
>WENV170963240
MRWG01000058
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
84827
84753
-
Thr
GGT
[ENA]
¡û
>PL191000049
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1965201
1965275
+
Thr
GGT
[Ensembl]
¡û
>W09103041
AAIT01000003
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
341643
341717
+
Thr
GGT
[ENA]
¡û
>C191144242
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
478445
478519
+
Thr
GGT
-
¡û
>C191157864
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
1318754
1318828
+
Thr
GGT
-
¡û
>C191166461
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
636830
636756
-
Thr
GGT
-
¡û
>C191166524
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
614553
614479
-
Thr
GGT
-
¡û
>W1911283618
NTJD01000001
Alphaproteobacteria
Thioclava arenosa CAU 1312 [NTJD]
434806
434732
-
Thr
GGT
[ENA]
¡û
>W1911696574
QMEK01000006
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
65984
66058
+
Thr
GGT
[ENA]
¡û
>W1911698498
QNRC01000008
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
20919
20845
-
Thr
GGT
[ENA]
¡û
>W1810062049
PDNU01000008
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
214038
214112
+
Thr
GGT
[ENA]
¡û
>W1810444993
PZKF01000013
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
1570
1496
-
Thr
GGT
[ENA]
¡û
>W1810707376
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
690776
690702
-
Thr
GGT
[ENA]
¡û
>W1810917917
QWEY01000005
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
90277
90203
-
Thr
GGT
[ENA]
¡û
>W2010370384
CAHJWU010000093
Alphaproteobacteria
Rhodospirillales bacterium [CAHJWU]
8348
8422
+
Thr
GGT
[ENA]
¡û
>W2010473667
JAAIKB010000002
Alphaproteobacteria
Roseomonas sp. PeD5 [JAAIKB]
598989
599063
+
Thr
GGT
[ENA]
¡û
>W2010575407
JAAVUP010000001
Alphaproteobacteria
Roseomonas oryzicola KCTC 22478 [JAAVUP]
720242
720168
-
Thr
GGT
[ENA]
¡û
>W2010683167
JACEMU010000004
Alphaproteobacteria
Paracoccus sp. S1E-3 [JACEMU]
762915
762841
-
Thr
GGT
[ENA]
¡û
>W2010712141
JACHOD010000006
Alphaproteobacteria
Paracoccus denitrificans DSM 104981 [JACHOD]
236863
236937
+
Thr
GGT
[ENA]
¡û
>W2010724959
JACIDT010000005
Alphaproteobacteria
Sphingobium jiangsuense DSM 26189 [JACIDT]
269082
269008
-
Thr
GGT
[ENA]
¡û
>W2010731593
JACIJE010000007
Alphaproteobacteria
Roseomonas alkaliterrae DSM 25895 [JACIJE]
184662
184736
+
Thr
GGT
[ENA]
¡û
>W2010781296
LMUG01000048
Alphaproteobacteria
Acidisoma sp. S159 [LMUG]
184280
184206
-
Thr
GGT
[ENA]
¡û
>W2010781748
LMUQ01000037
Alphaproteobacteria
Acidisoma sp. L85 [LMUQ]
30615
30689
+
Thr
GGT
[ENA]
¡û
>W2010782142
LMUY01000145
Alphaproteobacteria
Acidisphaera sp. L21 [LMUY]
236251
236322
+
Thr
GGT
[ENA]
¡û
>W2011152871
OAOQ01000005
Alphaproteobacteria
Rhodobacter ovatus JA234 [OAOQ]
200627
200701
+
Thr
GGT
[ENA]
¡û
>W2011347535
QZEW01000153
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
6204
6130
-
Thr
GGT
[ENA]
¡û
>W2011460629
RPEM01000007
Alphaproteobacteria
Tabrizicola sp. DRYC-M-16 [RPEM]
262617
262691
+
Thr
GGT
[ENA]
¡û
>W2011532268
SBKP01000002
Alphaproteobacteria
Sphingobium sp. CHR27 [SBKP]
186806
186880
+
Thr
GGT
[ENA]
¡û
>W2011665892
SORY01000001
Alphaproteobacteria
Neokomagataea sp. Ta1 [SORY]
306643
306717
+
Thr
GGT
[ENA]
¡û
>W2011665964
SORZ01000002
Alphaproteobacteria
Neokomagataea sp. Jb2 [SORZ]
661228
661302
+
Thr
GGT
[ENA]
¡û
>W2011694407
STGB01000002
Alphaproteobacteria
Roseomonas sp. AR75 [STGB]
827255
827181
-
Thr
GGT
[ENA]
¡û
>W2011694498
STGD01000004
Alphaproteobacteria
Roseomonas sp. HF4 [STGD]
53511
53585
+
Thr
GGT
[ENA]
¡û
>W2012081944
VLKU01000014
Alphaproteobacteria
Paracoccus sulfuroxidans CGMCC 1.5364 [VLKU]
7973
7899
-
Thr
GGT
[ENA]
¡û
>W2012197289
VWPK01000001
Alphaproteobacteria
Rhodovastum atsumiense DSM 21279 [VWPK]
254824
254898
+
Thr
GGT
[ENA]
¡û
>W2012201960
VWVY01000008
Alphaproteobacteria
Rhizobiales bacterium SYSU XM002 [VWVY]
485
411
-
Thr
GGT
[ENA]
¡û
>W2110028025
BMJQ01000024
Alphaproteobacteria
Aliidongia dinghuensis CGMCC 1.15725 [BMJQ]
1134
1060
-
Thr
GGT
[ENA]
¡û
>W2110029015
BMKL01000001
Alphaproteobacteria
Altererythrobacter deserti CGMCC 1.15959 [BMKL]
2623963
2624037
+
Thr
GGT
[ENA]
¡û
>W2110029585
BMKW01000005
Alphaproteobacteria
Roseomonas lacus CGMCC 1.3617 [BMKW]
10073
10147
+
Thr
GGT
[ENA]
¡û
>W2110137998
JAAEDI010000043
Alphaproteobacteria
Roseomonas terrae LMG 31159 [JAAEDI]
25507
25581
+
Thr
GGT
[ENA]
¡û
>W2110138022
JAAEDK010000005
Alphaproteobacteria
Roseomonas oryzicola LMG 31161 [JAAEDK]
51699
51773
+
Thr
GGT
[ENA]
¡û
>W2110138103
JAAEDL010000028
Alphaproteobacteria
Roseomonas eburnea LMG 31228 [JAAEDL]
68421
68495
+
Thr
GGT
[ENA]
¡û
>W2110138117
JAAEDM010000005
Alphaproteobacteria
Roseomonas soli LMG 31231 [JAAEDM]
22608
22682
+
Thr
GGT
[ENA]
¡û
>W2110198474
JACADQ010000093
Alphaproteobacteria
Roseomonas sp. MO17 [JACADQ]
2979
3053
+
Thr
GGT
[ENA]
¡û
>W2110408796
JAEFCF010000007
Alphaproteobacteria
Paracoccus sp. IB05 [JAEFCF]
174713
174787
+
Thr
GGT
[ENA]
¡û
>W2110438373
JAEPRQ010000005
Alphaproteobacteria
Paracoccus caeni MJ17 [JAEPRQ]
164123
164049
-
Thr
GGT
[ENA]
¡û
>W2110445334
JAERQN010000004
Alphaproteobacteria
Roseomonas ponticola SYSU M41301 [JAERQN]
411847
411773
-
Thr
GGT
[ENA]
¡û
>W2110453366
JAESVA010000002
Alphaproteobacteria
Acidisoma cellulosilytica HW T5.17 [JAESVA]
584971
585045
+
Thr
GGT
[ENA]
¡û
>W2110453436
JAESVB010000005
Alphaproteobacteria
Acidisoma silvae HW T2.11 [JAESVB]
242994
243068
+
Thr
GGT
[ENA]
¡û
>W2110492558
JAFEUU010000004
Alphaproteobacteria
Rubritepida sp. SYSU D01096 [JAFEUU]
356632
356706
+
Thr
GGT
[ENA]
¡û
>W2110503522
JAFIQU010000002
Alphaproteobacteria
Arenibaculum pallidiluteum SYSU D00532 [JAFIQU]
36912
36838
-
Thr
GGT
[ENA]
¡û
>W2110503526
JAFIQU010000003
Alphaproteobacteria
Arenibaculum pallidiluteum SYSU D00532 [JAFIQU]
279583
279657
+
Thr
GGT
[ENA]
¡û
>W2110556335
JAGIYZ010000019
Alphaproteobacteria
Roseomonas sp. PWR1 [JAGIYZ]
99128
99054
-
Thr
GGT
[ENA]
¡û
>W2110591811
JAHCDA010000002
Alphaproteobacteria
Roseococcus sp. XZZS9 [JAHCDA]
198905
198979
+
Thr
GGT
[ENA]
¡û
>W2110592155
JAHCDM010000005
Alphaproteobacteria
Roseococcus sp. SDR [JAHCDM]
167334
167408
+
Thr
GGT
[ENA]
¡û
>W2110612105
JAHKQB010000029
Alphaproteobacteria
Paracoccus sp. C2R09 [JAHKQB]
151810
151736
-
Thr
GGT
[ENA]
¡û
>W2110639926
JAHRCU010000005
Alphaproteobacteria
Roseococcus sp. SDR [JAHRCU]
167334
167408
+
Thr
GGT
[ENA]
¡û
>W2110650747
JAHVAI010000012
Alphaproteobacteria
Sinirhodobacter sp. B57 [JAHVAI]
9350
9424
+
Thr
GGT
[ENA]
¡û
>W2110663791
JAHYBZ010000004
Alphaproteobacteria
Roseomonas sp. HJA6 [JAHYBZ]
145512
145438
-
Thr
GGT
[ENA]
¡û
>C211255051
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
663734
663808
+
Thr
GGT
-
¡û
>C211344516
CP076361
Alphaproteobacteria
Gemmobacter sp. con5 [CP076361]
2564265
2564339
+
Thr
GGT
-
¡û
>C211345472
CP076448
Alphaproteobacteria
Elioraea sp. MS-P2 [CP076448]
2288781
2288855
+
Thr
GGT
-
¡û
>C231018048
AP025637
Alphaproteobacteria
Roseomonas sp. S08 [AP025637]
3502510
3502436
-
Thr
GGT
-
¡û
>C231269640
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
150310
150384
+
Thr
GGT
-
¡û
>C231307433
CP091851
Alphaproteobacteria
Hyphomicrobiales bacterium 7MK25 [CP091851]
3781045
3781119
+
Thr
GGT
-
¡û
>C231555007
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
561298
561224
-
Thr
GGT
-
¡û
>C231570005
CP115851
Alphaproteobacteria
Roseomonas cervicalis PL22-11A [CP115851]
1273756
1273682
-
Thr
GGT
-
¡û
>C231654985
OW485601
Alphaproteobacteria
Rhodovastum atsumiense G2-11 [OW485601]
1165098
1165024
-
Thr
GGT
-
¡û
>W10119148
ADVL01000157
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
5719
5645
-
Thr
GGT
[ENA]
¡û
>W2130010012
JAAEDJ010000151
Alphaproteobacteria
Roseomonas alkaliterrae LMG 31230 [JAAEDJ]
7519
7593
+
Thr
GGT
[ENA]
¡û
>W2130013149
JACADR010000186
Alphaproteobacteria
Roseomonas sp. OP-27 [JACADR]
5797
5871
+
Thr
GGT
[ENA]
¡û
>W2310026689
BSPS01000053
Alphaproteobacteria
Sphingobium jiangsuense NBRC 112973 [BSPS]
5999
6073
+
Thr
GGT
[ENA]
¡û
>W1511348667
JRKP01000092
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
9227
9153
-
Thr
GGT
[ENA]
¡û
>W1511348758
JRKR01000139
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
4137
4063
-
Thr
GGT
[ENA]
¡û
>W11125368
ADVL01000157
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
5719
5645
-
Thr
GGT
[ENA]
¡û
>W11179037
AGFR01000022
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
4833
4907
+
Thr
GGT
[ENA]
¡û
>W1610049820
BBFH01000057
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
7114
7040
-
Thr
GGT
[ENA]
¡û
>W1610753812
LNEW01000078
Alphaproteobacteria
Rhodospirillales bacterium Ga0074136 [LNEW]
58262
58336
+
Thr
GGT
[ENA]
¡û
>W1710046219
BBFH01000057
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
7114
7040
-
Thr
GGT
[ENA]
¡û
>W1710528193
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
184108
184182
+
Thr
GGT
[ENA]
¡û
>W1710567294
FOSQ01000002
Alphaproteobacteria
Falsiroseomonas stagni DSM 19981 [FOSQ]
554408
554334
-
Thr
GGT
[ENA]
¡û
>W1710624606
JOPB01000022
Alphaproteobacteria
Commensalibacter intestini [JOPB]
33384
33310
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK