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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378387 (22 seq.)
>W1711137383
LVBI01000031
Spirochaetota
Spirochaetales bacterium Spiro_07 [LVBI]
31903
31831
-
His
GTG
[ENA]
¡û
>W131205931
ATFF01000006
Spirochaetota
Treponema maltophilum ATCC 51939 [ATFF]
985004
985078
+
His
GTG
[ENA]
¡û
>WENV180003097
FLNY01004876
[FLNY] bioreactor metagenome; Moose rumen
6625
6697
+
His
GTG
[ENA]
¡û
>WENV180665541
OCVV011190579
[OCVV] gut metagenome; gut
519
447
-
His
GTG
[ENA]
¡û
>WENV180665545
OCVV011190579
[OCVV] gut metagenome; gut
519
447
-
His
GTG
[ENA]
¡û
>WENV180727327
ODGU01004350
[ODGU] human metagenome; G_DNA_Supragingival plaque
6612
6540
-
His
GTG
[ENA]
¡û
>WENV180797939
ODJB01171833
[ODJB] human metagenome; G_DNA_Supragingival plaque
285
357
+
His
GTG
[ENA]
¡û
>WENV180809990
ODJK01086591
[ODJK] human metagenome; G_DNA_Subgingival plaque
427
499
+
His
GTG
[ENA]
¡û
>WENV180938739
ODTX01006007
[ODTX] human metagenome; G_DNA_Supragingival plaque
2257
2185
-
His
GTG
[ENA]
¡û
>WENV180944047
ODUC01006598
[ODUC] human metagenome; G_DNA_Supragingival plaque
4834
4906
+
His
GTG
[ENA]
¡û
>WENV180950907
ODUH01003777
[ODUH] human metagenome; G_DNA_Subgingival plaque
4817
4889
+
His
GTG
[ENA]
¡û
>WENV180976584
ODUY01154783
[ODUY] human metagenome; G_DNA_Supragingival plaque
149
221
+
His
GTG
[ENA]
¡û
>WENV181064830
ODYP01115615
[ODYP] human metagenome; G_DNA_Supragingival plaque
62
134
+
His
GTG
[ENA]
¡û
>WENV181081133
OEAS01136192
[OEAS] human metagenome; G_DNA_Supragingival plaque
484
412
-
His
GTG
[ENA]
¡û
>WENV170672003
LAHU01262895
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
583
657
+
His
GTG
[ENA]
¡û
>C211095705
CP054142
Spirochaetota
Treponema parvum ATCC 700770 [CP054142]
1547077
1547150
+
His
GTG
-
¡û
>C211096364
CP054257
Spirochaetota
Treponema parvum ATCC 700773 [CP054257]
1121893
1121820
-
His
GTG
-
¡û
>C211116268
CP058315
Spirochaetota
Treponema parvum OMZ 843 [CP058315]
1518597
1518670
+
His
GTG
-
¡û
>W2110740576
JPUF01000019
Spirochaetota
Treponema zioleckii kT3 [JPUF]
56760
56832
+
His
GTG
[ENA]
¡û
>C231194506
CP084606
Spirochaetota
Brucepastera parasyntrophica RmG11 [CP084606]
3189506
3189434
-
His
GTG
-
¡û
>C11123091
CP002631
Spirochaetota
Treponema succinifaciens DSM 2489 [CP002631]
1390089
1390161
+
His
GTG
[Ensembl]
¡û
>W1610948503
LVBI01000031
Spirochaetota
Spirochaetales bacterium Spiro_07 [LVBI]
31903
31831
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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