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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380133 (53 seq.)
>W1710796640
LJSH01000001
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
698641
698715
+
Thr
TGT
[ENA]
¡û
>W1711694753
MSIG01000005
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
366913
366839
-
Thr
TGT
[ENA]
¡û
>W131235092
AULH01000006
Alphaproteobacteria
Pleomorphomonas koreensis DSM 23070 [AULH]
183119
183045
-
Thr
TGT
[ENA]
¡û
>C018992
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3809553
3809627
+
Thr
TGT
[Ensembl]
¡û
>WENV181233610
OFET01000016
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
170721
170795
+
Thr
TGT
[ENA]
¡û
>WENV181234272
OFEU01000020
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
170721
170795
+
Thr
TGT
[ENA]
¡û
>W141194142
AYSU01000009
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
586201
586127
-
Thr
TGT
[ENA]
¡û
>WENV170011223
APMI01050805
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
210
284
+
Thr
TGT
[ENA]
¡û
>WENV170011760
APMI01089010
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
598
672
+
Thr
TGT
[ENA]
¡û
>WENV170012323
APMI01153980
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
638
712
+
Thr
TGT
[ENA]
¡û
>WENV170417554
CEUL01360384
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
982
1056
+
Thr
TGT
[ENA]
¡û
>WENV170423499
CEUN01427974
[CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2206
2132
-
Thr
TGT
[ENA]
¡û
>WENV170465266
CEVD01464450
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
233
307
+
Thr
TGT
[ENA]
¡û
>C181041858
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3711747
3711821
+
Thr
TGT
-
¡û
>C181063219
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2236928
2236854
-
Thr
TGT
-
¡û
>C181227394
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
1620758
1620684
-
Thr
TGT
-
¡û
>W141820594
JQMZ01000001
Alphaproteobacteria
Oceanicaulis sp. HL-87 [JQMZ]
2119354
2119428
+
Thr
TGT
[ENA]
¡û
>W2010678136
JACDIT010000002
Alphaproteobacteria
Chthonobacter albigriseus KCTC 42450 [JACDIT]
199023
199097
+
Thr
TGT
[ENA]
¡û
>W2011063889
NRSI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
111330
111256
-
Thr
TGT
[ENA]
¡û
>W2011292604
QTKI01000364
Alphaproteobacteria
Rhodopseudomonas sp. BR0C11 [QTKI]
1522
1596
+
Thr
TGT
[ENA]
¡û
>W2011305316
QUMK01000011
Alphaproteobacteria
Rhodopseudomonas sp. BR0M22 [QUMK]
82348
82274
-
Thr
TGT
[ENA]
¡û
>W2011538360
SCMY01000003
Alphaproteobacteria
Rhizobiales bacterium 2SD [SCMY]
14231
14157
-
Thr
TGT
[ENA]
¡û
>W2011603637
SJAT01000003
Alphaproteobacteria
Rhizobiales bacterium PAMC 29128 [SJAT]
254910
254836
-
Thr
TGT
[ENA]
¡û
>W2011625844
SLZF01000008
Alphaproteobacteria
Bosea sp. BK604 [SLZF]
400675
400601
-
Thr
TGT
[ENA]
¡û
>W2011642342
SMZP01000009
Alphaproteobacteria
Caulobacter sp. RHG1 [SMZP]
300781
300707
-
Thr
TGT
[ENA]
¡û
>W2011647793
SNWJ01000009
Alphaproteobacteria
Bosea sp. BK498 [SNWJ]
736369
736295
-
Thr
TGT
[ENA]
¡û
>W2011812683
UFQQ01000002
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [UFQQ]
157980
158054
+
Thr
TGT
[ENA]
¡û
>W2110403259
JADZLT010000048
Alphaproteobacteria
Methylobrevis albus L22 [JADZLT]
4486
4560
+
Thr
TGT
[ENA]
¡û
>C201096530
CP041387
Alphaproteobacteria
Rhodopseudomonas palustris GJ-22 [CP041387]
2682790
2682864
+
Thr
TGT
-
¡û
>C211399712
CP082923
Alphaproteobacteria
Caulobacter segnis CBR1 [CP082923]
2903716
2903790
+
Thr
TGT
-
¡û
>C231154285
CP076676
Alphaproteobacteria
Rhodopseudomonas palustris TLS06 [CP076676]
3619265
3619339
+
Thr
TGT
-
¡û
>C231154430
CP076679
Alphaproteobacteria
Rhodopseudomonas palustris VNW64 [CP076679]
3838917
3838991
+
Thr
TGT
-
¡û
>W10112823
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
57822
57896
+
Thr
TGT
[ENA]
¡û
>C231458641
CP102774
Alphaproteobacteria
Bosea sp. NBC_00436 [CP102774]
2433221
2433295
+
Thr
TGT
-
¡û
>C231545327
CP113083
Alphaproteobacteria
Rhodopseudomonas palustris CGA0092 [CP113083]
3808876
3808950
+
Thr
TGT
-
¡û
>C231546156
CP113162
Alphaproteobacteria
[Pseudomonas] carboxydohydrogena DSM 1083 [CP113162]
1327097
1327023
-
Thr
TGT
-
¡û
>C231555010
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
412422
412348
-
Thr
TGT
-
¡û
>C231562974
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
2323747
2323821
+
Thr
TGT
-
¡û
>C241129903
CP048630
Alphaproteobacteria
Ancylobacter pratisalsi DSM 102029 [CP048630]
141414
141488
+
Thr
TGT
-
¡û
>C241300916
CP132359
Alphaproteobacteria
Bosea beijingensis REN20 [CP132359]
3420402
3420328
-
Thr
TGT
-
¡û
>C11117285
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
1818074
1818000
-
Thr
TGT
[Ensembl]
¡û
>W11116050
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
57822
57896
+
Thr
TGT
[ENA]
¡û
>C161108110
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1031036
1030962
-
Thr
TGT
[Ensembl]
¡û
>W1610649180
LJHU01000072
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
12902
12828
-
Thr
TGT
[ENA]
¡û
>W1610660597
LJSH01000001
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
698641
698715
+
Thr
TGT
[ENA]
¡û
>W1610741868
LMRT01000013
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
691728
691654
-
Thr
TGT
[ENA]
¡û
>W1610912219
LSIB01000144
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
42588
42514
-
Thr
TGT
[ENA]
¡û
>W1610913132
LSIY01000233
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
8298
8224
-
Thr
TGT
[ENA]
¡û
>W1610913668
LSJL01000173
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
9809
9883
+
Thr
TGT
[ENA]
¡û
>W1610913817
LSJP01000251
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
8297
8223
-
Thr
TGT
[ENA]
¡û
>W1610914167
LSJX01000203
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
8290
8216
-
Thr
TGT
[ENA]
¡û
>W1710515691
FNBZ01000002
Alphaproteobacteria
Bosea robiniae [FNBZ]
632878
632804
-
Thr
TGT
[ENA]
¡û
>W1710569735
FOUQ01000016
Alphaproteobacteria
Pleomorphomonas diazotrophica [FOUQ]
24085
24011
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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