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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.380475 (32 seq.)
>W1711769474
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
170153
170227
+
Arg
CCG
[ENA]
¡û
>C171037557
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
2393481
2393409
-
Arg
CCG
-
¡û
>C171104424
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
590461
590533
+
Arg
CCG
-
¡û
>W131169889
ARFC01000002
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
281788
281714
-
Arg
CCG
[ENA]
¡û
>W131169946
ARFD01000098
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
20435
20363
-
Arg
CCG
[ENA]
¡û
>C181113142
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
3860565
3860493
-
Arg
CCG
-
¡û
>W09109931
ABUR01000018
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
135676
135602
-
Arg
CCG
[ENA]
¡û
>W1911497292
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
361681
361609
-
Arg
CCG
[ENA]
¡û
>W1810364379
PVTE01000012
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
120890
120962
+
Arg
CCG
[ENA]
¡û
>W1810692102
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4846160
4846088
-
Arg
CCG
[ENA]
¡û
>SRA1016311
SRR023846.444410
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
81
155
+
Arg
CCG
[SRA]
>C151068613
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
6163841
6163915
+
Arg
CCG
[Ensembl]
¡û
>W2010468912
JAAGNZ010000002
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
259146
259074
-
Arg
CCG
[ENA]
¡û
>W2011158196
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
361681
361609
-
Arg
CCG
[ENA]
¡û
>W2011532775
SBLB01000008
Bacteroidota
Spirosoma sp. TY50 [SBLB]
152800
152728
-
Arg
CCG
[ENA]
¡û
>W2011705622
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
172660
172732
+
Arg
CCG
[ENA]
¡û
>W2012222089
WAEL01000002
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
798195
798267
+
Arg
CCG
[ENA]
¡û
>W2012412164
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
4846160
4846088
-
Arg
CCG
[ENA]
¡û
>W2012412179
WPIN01000002
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
282803
282731
-
Arg
CCG
[ENA]
¡û
>W2110283050
JACXAA010000018
Bacteroidota
Spirosoma validum BT704 [JACXAA]
82706
82778
+
Arg
CCG
[ENA]
¡û
>W2110517348
JAFMYU010000034
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
4043
3971
-
Arg
CCG
[ENA]
¡û
>W2110517366
JAFMYV010000005
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
180739
180811
+
Arg
CCG
[ENA]
¡û
>W2110517405
JAFMYW010000004
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
110286
110358
+
Arg
CCG
[ENA]
¡û
>C201250736
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
1211196
1211268
+
Arg
CCG
-
¡û
>C231263226
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
417347
417275
-
Arg
CCG
-
¡û
>W2110772276
VFIA01000006
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
128067
127995
-
Arg
CCG
[ENA]
¡û
>W2110772301
VFIC01000003
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
184262
184334
+
Arg
CCG
[ENA]
¡û
>C241057058
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
432160
432232
+
Arg
CCG
-
¡û
>C241140702
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
1077153
1077081
-
Arg
CCG
-
¡û
>C241171840
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
5763429
5763501
+
Arg
CCG
-
¡û
>C10111779
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7114722
7114648
-
Arg
CCG
[Ensembl]
¡û
>W1710558192
FOLQ01000005
Bacteroidota
Spirosoma endophyticum [FOLQ]
111792
111866
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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