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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.38291 (42 seq.)
>W1711065195
LSBP01000003
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
172418
172507
+
Ser
TGA
[ENA]
¡û
>C006970
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
2185514
2185603
+
Ser
TGA
[Ensembl]
¡û
>WENV170294576
CESC01092097
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
691
780
+
Ser
TGA
[ENA]
¡û
>WENV170373036
CETS01158695
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
942
1031
+
Ser
TGA
[ENA]
¡û
>WENV170487586
CEVO01071993
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
971
882
-
Ser
TGA
[ENA]
¡û
>WENV170724821
LSQX01319832
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4094
4183
+
Ser
TGA
[ENA]
¡û
>W141562137
JHYY01000036
Gammaproteobacteria
Halotalea alkalilenta DSM 17697 [JHYY]
60928
60839
-
Ser
TGA
[ENA]
¡û
>W141754518
JNVT01000071
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
59086
58997
-
Ser
TGA
[ENA]
¡û
>W1910840504
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
2325125
2325214
+
Ser
TGA
[ENA]
¡û
>W1810062708
PDOH01000038
Gammaproteobacteria
Halomonas heilongjiangensis 9-2 [PDOH]
70792
70881
+
Ser
TGA
[ENA]
¡û
>W1810199968
PNRE01000082
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
4146
4235
+
Ser
TGA
[ENA]
¡û
>W1810385458
PXNT01000017
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
37139
37228
+
Ser
TGA
[ENA]
¡û
>W1810444657
PZJU01000006
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
205843
205932
+
Ser
TGA
[ENA]
¡û
>W1810609430
QGTY01000005
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
59765
59676
-
Ser
TGA
[ENA]
¡û
>W2010103561
BJXU01000094
Gammaproteobacteria
Halomonas cupida NBRC 102219 [BJXU]
102105
102016
-
Ser
TGA
[ENA]
¡û
>W2010751813
JACLGO010000042
Gammaproteobacteria
Pseudomonas xiamenensis PX1 [JACLGO]
4082
4171
+
Ser
TGA
[ENA]
¡û
>W2010930591
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
2325125
2325214
+
Ser
TGA
[ENA]
¡û
>W2011237711
QEQS01000005
Gammaproteobacteria
Chromohalobacter salexigens MP25462 [QEQS]
102431
102520
+
Ser
TGA
[ENA]
¡û
>W2011548685
SDMO01000001
Gammaproteobacteria
Halomonas sp. ATF 5.2 [SDMO]
310668
310579
-
Ser
TGA
[ENA]
¡û
>W2011655296
SOBR01000003
Gammaproteobacteria
Chromohalobacter marismortui DSM 6770 [SOBR]
96818
96907
+
Ser
TGA
[ENA]
¡û
>W2011844523
UHIC01000001
Gammaproteobacteria
Suttonella ornithocola NCTC13337 [UHIC]
1742099
1742188
+
Ser
TGA
[ENA]
¡û
>W2012127421
VRYH01000004
Gammaproteobacteria
Aidingimonas sp. XHU 5135 [VRYH]
224319
224408
+
Ser
TGA
[ENA]
¡û
>W2012446550
WUTT01000001
Gammaproteobacteria
Halomonas alimentaria DSM 15356 [WUTT]
2219251
2219340
+
Ser
TGA
[ENA]
¡û
>W2110047453
BMXH01000003
Gammaproteobacteria
Aidingimonas halophila KCTC 12885 [BMXH]
235016
235105
+
Ser
TGA
[ENA]
¡û
>W2110050473
BMZM01000001
Gammaproteobacteria
Kushneria pakistanensis KCTC 42082 [BMZM]
1082494
1082405
-
Ser
TGA
[ENA]
¡û
>W2110423389
JAEKJT010000001
Gammaproteobacteria
Halomonas litopenaei SN20-17 [JAEKJT]
816576
816665
+
Ser
TGA
[ENA]
¡û
>W2110579142
JAGXFC010000001
Gammaproteobacteria
Modicisalibacter tunisiensis R2A 31.P [JAGXFC]
862398
862309
-
Ser
TGA
[ENA]
¡û
>W2110579296
JAGXFF010000002
Gammaproteobacteria
Halomonas coralii MOD 31.J [JAGXFF]
706572
706661
+
Ser
TGA
[ENA]
¡û
>W2110651858
JAHVHY010000007
Gammaproteobacteria
Halomonas sp. DP5Y7-2 [JAHVHY]
173185
173096
-
Ser
TGA
[ENA]
¡û
>W2110652841
JAHVIO010000001
Gammaproteobacteria
Halomonas sp. DP8Y7-3 [JAHVIO]
189878
189967
+
Ser
TGA
[ENA]
¡û
>W2110701718
JAIVAB010000002
Gammaproteobacteria
Halomonas denitrificans AmN35-1 [JAIVAB]
598973
598884
-
Ser
TGA
[ENA]
¡û
>C231287740
CP090975
Gammaproteobacteria
Suttonella sp. R2A3 [CP090975]
1697276
1697365
+
Ser
TGA
-
¡û
>W1510072015
CDGZ01000011
Gammaproteobacteria
Chromohalobacter japonicus CJ [CDGZ]
100296
100385
+
Ser
TGA
[ENA]
¡û
>C231421411
CP099965
Gammaproteobacteria
Halomonas sp. DN3 [CP099965]
2409223
2409312
+
Ser
TGA
-
¡û
>C241131657
CP048812
Gammaproteobacteria
Halomonas socia CKY01 [CP048812]
3590662
3590751
+
Ser
TGA
-
¡û
>W1511518448
JXYB01000013
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
6728
6639
-
Ser
TGA
[ENA]
¡û
>C161085565
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
2760635
2760724
+
Ser
TGA
[Ensembl]
¡û
>W1610905984
LSBP01000003
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
172418
172507
+
Ser
TGA
[ENA]
¡û
>W1710519426
FNES01000008
Gammaproteobacteria
Halomonas gudaonensis [FNES]
51549
51460
-
Ser
TGA
[ENA]
¡û
>W1710528583
FNNI01000005
Gammaproteobacteria
Aidingimonas halophila [FNNI]
235335
235424
+
Ser
TGA
[ENA]
¡û
>W1710574282
FOYD01000009
Gammaproteobacteria
Halopseudomonas formosensis [FOYD]
4329
4418
+
Ser
TGA
[ENA]
¡û
>W1710582952
FQUJ01000020
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
4562
4651
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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