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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.389826 (42 seq.)
>W1711413558
MGWI01000015
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
93470
93396
-
Trp
CCA
[ENA]
¡û
>W131224674
AUCZ01000003
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
220376
220302
-
Trp
CCA
[ENA]
¡û
>w023508
AAXX01000002
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
468493
468569
+
Trp
CCA
[ENA]
¡û
>WENV180039025
LLBY010020703
[LLBY] soil metagenome; soil from tomato rhizosphere
571
643
+
Trp
CCA
[ENA]
¡û
>WENV180041287
LLBZ010085934
[LLBZ] soil metagenome; soil from tomato rhizosphere
1262
1334
+
Trp
CCA
[ENA]
¡û
>WENV180285355
OBID01349666
[OBID] metagenome; sludge
143
215
+
Trp
CCA
[ENA]
¡û
>WENV181836226
OGVJ01002387
[OGVJ] freshwater metagenome; freshwater
1631
1703
+
Trp
CCA
[ENA]
¡û
>WENV181838989
OGVN01048125
[OGVN] freshwater metagenome; freshwater
205
277
+
Trp
CCA
[ENA]
¡û
>WENV181843384
OGVU01011558
[OGVU] freshwater metagenome; freshwater
937
865
-
Trp
CCA
[ENA]
¡û
>WENV181843879
OGVV01000405
[OGVV] freshwater metagenome; freshwater
2557
2629
+
Trp
CCA
[ENA]
¡û
>WENV181856472
OGWN01001373
[OGWN] freshwater metagenome; freshwater
1959
2031
+
Trp
CCA
[ENA]
¡û
>WENV181857471
OGWO01007871
[OGWO] freshwater metagenome; freshwater
460
532
+
Trp
CCA
[ENA]
¡û
>WENV170229941
CEQG01244407
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
791
717
-
Trp
CCA
[ENA]
¡û
>WENV170559635
CXWL01134340
[CXWL] groundwater metagenome; biofilm material
2837
2911
+
Trp
CCA
[ENA]
¡û
>WENV170645814
JPYU01087352
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
146
72
-
Trp
CCA
[ENA]
¡û
>WENV170645998
JQGF01005436
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
243
317
+
Trp
CCA
[ENA]
¡û
>W141702891
JMLU01000003
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
175289
175215
-
Trp
CCA
[ENA]
¡û
>W1810260946
PQNY01000020
Bacteroidota
Flavobacterium croceum DSM 17960 [PQNY]
20891
20819
-
Trp
CCA
[ENA]
¡û
>W2010310973
CABWML010000002
Bacteroidota
Flavobacterium sp. 9AF [CABWML]
65455
65383
-
Trp
CCA
[ENA]
¡û
>W2010490160
JAAJBV010000004
Bacteroidota
Flavobacterium sp. TWA-26 [JAAJBV]
289358
289430
+
Trp
CCA
[ENA]
¡û
>W2010522771
JAANOQ010000004
Bacteroidota
Flavobacterium sp. F372 [JAANOQ]
95180
95252
+
Trp
CCA
[ENA]
¡û
>W2011196654
PJQW01000014
Bacteroidota
Flavobacterium sp. J27 [PJQW]
68345
68417
+
Trp
CCA
[ENA]
¡û
>W2011615998
SJZD01000007
Bacteroidota
Flavobacterium sp. H122 [SJZD]
171244
171172
-
Trp
CCA
[ENA]
¡û
>W2011651505
SNZC01000005
Bacteroidota
Flavobacterium cheniae DSM 22462 [SNZC]
86883
86811
-
Trp
CCA
[ENA]
¡û
>W2011980719
VDCZ01000005
Bacteroidota
Flavobacterium sp. TP390 [VDCZ]
155832
155760
-
Trp
CCA
[ENA]
¡û
>W2012011055
VEVQ02000003
Bacteroidota
Flavobacterium jejuense EC11 [VEVQ]
360700
360628
-
Trp
CCA
[ENA]
¡û
>W2012081543
VLKM01000008
Bacteroidota
Flavobacterium cheniae CGMCC 1.6844 [VLKM]
53472
53544
+
Trp
CCA
[ENA]
¡û
>W2012332500
WIBH01000007
Bacteroidota
Flavobacterium sp. LMO6 [WIBH]
168875
168803
-
Trp
CCA
[ENA]
¡û
>W2012332541
WIBI01000009
Bacteroidota
Flavobacterium sp. LMO9 [WIBI]
76005
75933
-
Trp
CCA
[ENA]
¡û
>W2012424944
WQLW01000005
Bacteroidota
Flavobacterium sp. TP390 [WQLW]
155832
155760
-
Trp
CCA
[ENA]
¡û
>W2110315555
JADFTZ010000001
Bacteroidota
Flavobacterium aquaticum 1Y8A [JADFTZ]
92932
92860
-
Trp
CCA
[ENA]
¡û
>C201156296
CP045292
Bacteroidota
Flavobacterium haoranii KCTC 23008 [CP045292]
1540068
1539996
-
Trp
CCA
-
¡û
>C231256936
CP089095
Bacteroidota
Flavobacterium cyclinae KSM-R2A25 [CP089095]
761174
761246
+
Trp
CCA
-
¡û
>C231270778
CP090145
Bacteroidota
Flavobacterium sediminilitoris YSM-43 [CP090145]
2061843
2061915
+
Trp
CCA
-
¡û
>C231524730
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2540828
2540900
+
Trp
CCA
-
¡û
>C231525309
CP110010
Bacteroidota
Flavobacterium sp. N501239 [CP110010]
2061827
2061899
+
Trp
CCA
-
¡û
>W1511526829
JYGZ01000002
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
225270
225344
+
Trp
CCA
[ENA]
¡û
>W1610535075
JRLW01000022
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
1466
1540
+
Trp
CCA
[ENA]
¡û
>WENV080071
AATO01003295
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1242
1168
-
Trp
CCA
[ENA]
>W1710588389
FQZH01000003
Bacteroidota
Flavobacterium haoranii [FQZH]
77083
77009
-
Trp
CCA
[ENA]
¡û
>W1710593820
FRYK01000001
Bacteroidota
Flavobacterium cucumis [FRYK]
175815
175741
-
Trp
CCA
[ENA]
¡û
>W1710637311
JRLW01000022
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
1466
1540
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK