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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39284 (28 seq.)
>W1711502554
MKSU01000020
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
42448
42537
+
Ser
GCT
[ENA]
¡û
>W1711506409
MKWJ01000022
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
144520
144431
-
Ser
GCT
[ENA]
¡û
>C171030420
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
790485
790396
-
Ser
GCT
-
¡û
>WENV180021066
FTDP01000024
[FTDP] metagenome; soil
1049
960
-
Ser
GCT
[ENA]
¡û
>WENV180027576
FTIZ01004830
[FTIZ] metagenome; soil
2456
2545
+
Ser
GCT
[ENA]
¡û
>WENV180355278
OBNH01000184
[OBNH] sediment metagenome; sediment
5130
5041
-
Ser
GCT
[ENA]
¡û
>WENV183744366
PJUK01012214
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
153
242
+
Ser
GCT
[ENA]
¡û
>WENV170576231
FRDC01000194
[FRDC] freshwater metagenome; water
105944
105855
-
Ser
GCT
[ENA]
¡û
>SRA1003263
SRR002326.349951
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
96
-
Ser
GCT
[SRA]
>SRA1003380
SRR002326.424319
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
206
+
Ser
GCT
[SRA]
>SRA1003414
SRR002326.452468
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
185
96
-
Ser
GCT
[SRA]
>SRA1003761
SRR002327.168251
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
159
248
+
Ser
GCT
[SRA]
>W1810858404
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
1933302
1933213
-
Ser
GCT
[ENA]
¡û
>W2010370541
CAHJXA010000149
Alphaproteobacteria
Sphingomonas bacterium [CAHJXA]
1771
1682
-
Ser
GCT
[ENA]
¡û
>W2010560289
JAASQV010000002
Alphaproteobacteria
Sphingomonas leidyi DSM 4733 [JAASQV]
1077809
1077898
+
Ser
GCT
[ENA]
¡û
>W2010669821
JACCAP010000001
Alphaproteobacteria
Sphingomonas sp. R1S6C [JACCAP]
239249
239338
+
Ser
GCT
[ENA]
¡û
>W2010674415
JACCFG010000005
Alphaproteobacteria
Sphingomonas sp. R-74633 [JACCFG]
199627
199716
+
Ser
GCT
[ENA]
¡û
>W2011070771
NSLI01000004
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
210678
210767
+
Ser
GCT
[ENA]
¡û
>W2011560388
SGIS01000006
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
138399
138310
-
Ser
GCT
[ENA]
¡û
>W2110663359
JAHXZL010000015
Alphaproteobacteria
Sphingomonas sp. RHCKR7 [JAHXZL]
47169
47080
-
Ser
GCT
[ENA]
¡û
>W2110689663
JAINVU010000003
Alphaproteobacteria
Hephaestia sp. CMS5P-6 [JAINVU]
92739
92650
-
Ser
GCT
[ENA]
¡û
>C201261388
CP053346
Alphaproteobacteria
Sphingomonas sp. AP4-R1 [CP053346]
4837437
4837526
+
Ser
GCT
-
¡û
>C211397930
CP082839
Alphaproteobacteria
Sphingomonas sp. AK-PDB1-5 [CP082839]
4283393
4283482
+
Ser
GCT
-
¡û
>C231620027
CP119315
Alphaproteobacteria
Sphingomonas sp. [CP119315]
2286393
2286482
+
Ser
GCT
-
¡û
>C241141803
CP050137
Alphaproteobacteria
Sphingomonas sp. CL5.1 [CP050137]
14303
14214
-
Ser
GCT
-
¡û
>W1610076739
BCYZ01000021
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
13445
13534
+
Ser
GCT
[ENA]
¡û
>W121046790
AIDW01000004
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
138159
138248
+
Ser
GCT
[ENA]
¡û
>W1710074428
BCYZ01000021
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
13445
13534
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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