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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3952 (52 seq.)
>W131036241
ALVJ01000024
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
225173
225266
+
Ser
GCT
[ENA]
¡û
>W131058347
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1979122
1979029
-
Ser
GCT
[ENA]
¡û
>W1711335786
MBRD01000024
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
13108
13015
-
Ser
GCT
[ENA]
¡û
>W1711584859
MNYZ01000059
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
13214
13307
+
Ser
GCT
[ENA]
¡û
>W1711666649
MRCD01000112
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
27431
27524
+
Ser
GCT
[ENA]
¡û
>W1711711363
MTAW01000104
Cyanobacteriota
Nostoc sp. 106C [MTAW]
23611
23702
+
Ser
GCT
[ENA]
¡û
>w002279
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
16267
16363
+
Ser
GCT
[ENA]
¡û
>W141067396
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
2047428
2047521
+
Ser
GCT
[ENA]
¡û
>W141096696
AVFS01000017
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
23680
23773
+
Ser
GCT
[ENA]
¡û
>W141096749
AVFT01000048
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
31975
32068
+
Ser
GCT
[ENA]
¡û
>W141096797
AVFU01000138
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
39296
39389
+
Ser
GCT
[ENA]
¡û
>W141096866
AVFW01000135
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
7577
7670
+
Ser
GCT
[ENA]
¡û
>W141096892
AVFX01000048
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
45233
45140
-
Ser
GCT
[ENA]
¡û
>W141096909
AVFY01000001
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
60339
60246
-
Ser
GCT
[ENA]
¡û
>WENV170640183
JFJP01014257
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5978
6071
+
Ser
GCT
[ENA]
¢þ
>WENV171003463
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
25110
25019
-
Ser
GCT
[ENA]
¢þ
>WENV171003768
NNBV01000698
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2309
2218
-
Ser
GCT
[ENA]
¢þ
>C181004922
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
4540640
4540733
+
Ser
GCT
-
¡û
>C181105259
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
4338524
4338431
-
Ser
GCT
-
¡û
>C181137846
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5260759
5260668
-
Ser
GCT
-
¡û
>C191000786
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
1197398
1197491
+
Ser
GCT
-
¡û
>C191001234
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2241641
2241734
+
Ser
GCT
-
¡û
>C191083040
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3888399
3888492
+
Ser
GCT
-
¡û
>W1910020519
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6403405
6403498
+
Ser
GCT
[ENA]
¡û
>W1910175480
BJCD01000050
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
8869
8962
+
Ser
GCT
[ENA]
¡û
>W1910194130
CZCS01000004
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
47870
47779
-
Ser
GCT
[ENA]
¡û
>W1910194176
CZCT02000035
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
1459
1366
-
Ser
GCT
[ENA]
¡û
>W1910194186
CZCT02000081
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
459
552
+
Ser
GCT
[ENA]
¡û
>W1910194253
CZCU01000153
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
112464
112557
+
Ser
GCT
[ENA]
¡û
>W1910194298
CZCZ01000008
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
81542
81635
+
Ser
GCT
[ENA]
¡û
>W1910502520
FYBH01000100
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
16100
16009
-
Ser
GCT
[ENA]
¡û
>W1910596212
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
15759
15666
-
Ser
GCT
[ENA]
¡û
>W1910596360
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
241914
241821
-
Ser
GCT
[ENA]
¡û
>W1910596541
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
15631
15538
-
Ser
GCT
[ENA]
¡û
>W1910596611
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
29008
28915
-
Ser
GCT
[ENA]
¡û
>W1910596694
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
7815
7722
-
Ser
GCT
[ENA]
¡û
>W1910596887
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
7777
7684
-
Ser
GCT
[ENA]
¡û
>W1910597221
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
7891
7798
-
Ser
GCT
[ENA]
¡û
>W1910646673
LWSY01000162
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
57737
57646
-
Ser
GCT
[ENA]
¡û
>W1911118729
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
462603
462512
-
Ser
GCT
[ENA]
¡û
>W1911118797
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
59461
59552
+
Ser
GCT
[ENA]
¡û
>W1511107992
JJML01000002
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
168598
168505
-
Ser
GCT
[ENA]
¡û
>W1511397122
JTCM01000057
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
218761
218854
+
Ser
GCT
[ENA]
¡û
>C161002534
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2199844
2199751
-
Ser
GCT
[Ensembl]
¡û
>C161038932
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
517503
517410
-
Ser
GCT
[Ensembl]
¡û
>W1610003550
AGCR01000054
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
36299
36208
-
Ser
GCT
[ENA]
¡û
>C131004274
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5641118
5641211
+
Ser
GCT
[Ensembl]
¡û
>C131004900
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
229988
229895
-
Ser
GCT
[Ensembl]
¡û
>C131010296
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4126269
4126362
+
Ser
GCT
[Ensembl]
¡û
>W1611066493
MBRD01000024
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
13108
13015
-
Ser
GCT
[ENA]
¡û
>W1710004170
AGCR01000054
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
36299
36208
-
Ser
GCT
[ENA]
¡û
>W1710088022
BDUC01000003
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
601521
601614
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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