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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.396032 (53 seq.)
>W1710893499
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
255660
255586
-
Gln
TTG
[ENA]
¡û
>C171115959
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
27933
27859
-
Gln
TTG
-
¡û
>WENV180020158
FTCV01002649
[FTCV] metagenome; soil
8816
8890
+
Gln
TTG
[ENA]
¡û
>WENV180257307
OBEQ010897499
[OBEQ] groundwater metagenome; groundwater
69
143
+
Gln
TTG
[ENA]
¡û
>WENV180260118
OBEQ011171019
[OBEQ] groundwater metagenome; groundwater
322
248
-
Gln
TTG
[ENA]
¡û
>WENV181144542
OEHO01035634
[OEHO] metagenome; unknown
203
277
+
Gln
TTG
[ENA]
¡û
>WENV181168260
OEIU01232652
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
134
208
+
Gln
TTG
[ENA]
¡û
>WENV181168355
OEIU01297720
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
16
90
+
Gln
TTG
[ENA]
¡û
>WENV183684074
ORMF010658560
[ORMF] groundwater metagenome; groundwater
443
369
-
Gln
TTG
[ENA]
¡û
>WENV183687285
ORMF011123513
[ORMF] groundwater metagenome; groundwater
82
8
-
Gln
TTG
[ENA]
¡û
>WENV183691203
ORMF011721942
[ORMF] groundwater metagenome; groundwater
387
461
+
Gln
TTG
[ENA]
¡û
>WENV183691208
ORMF011722278
[ORMF] groundwater metagenome; groundwater
443
369
-
Gln
TTG
[ENA]
¡û
>WENV183692222
ORMF011881897
[ORMF] groundwater metagenome; groundwater
1090
1164
+
Gln
TTG
[ENA]
¡û
>WENV183692895
ORMF011989380
[ORMF] groundwater metagenome; groundwater
13
87
+
Gln
TTG
[ENA]
¡û
>WENV183694425
ORMF012230909
[ORMF] groundwater metagenome; groundwater
2779
2853
+
Gln
TTG
[ENA]
¡û
>WENV183694474
ORMF012239835
[ORMF] groundwater metagenome; groundwater
468
542
+
Gln
TTG
[ENA]
¡û
>WENV183695052
ORMF012327385
[ORMF] groundwater metagenome; groundwater
7695
7621
-
Gln
TTG
[ENA]
¡û
>WENV170003639
AGTN01403158
[AGTN] bioreactor metagenome; poplar biomass
89
163
+
Gln
TTG
[ENA]
¡û
>WENV170576540
FRDC01000847
[FRDC] freshwater metagenome; water
341908
341982
+
Gln
TTG
[ENA]
¡û
>WENV170577532
FSSH01000122
[FSSH] freshwater metagenome; drinking water
10399
10473
+
Gln
TTG
[ENA]
¡û
>WENV170680634
LFEF01005855
[LFEF] freshwater metagenome; waterbloom
194
268
+
Gln
TTG
[ENA]
¡û
>WENV170708952
LNFM01000043
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3814
3888
+
Gln
TTG
[ENA]
¡û
>WENV170709184
LNFM01000166
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
158483
158409
-
Gln
TTG
[ENA]
¡û
>WENV170709247
LNFM01000215
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
202
276
+
Gln
TTG
[ENA]
¡û
>C181001061
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
4179006
4178932
-
Gln
TTG
-
¡û
>C191005692
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2704828
2704754
-
Gln
TTG
-
¡û
>C191152100
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3218768
3218694
-
Gln
TTG
-
¡û
>W1911148365
NPEU01000094
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
3622
3696
+
Gln
TTG
[ENA]
¡û
>W1911148482
NPEW01000374
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
849
775
-
Gln
TTG
[ENA]
¡û
>W1911148505
NPEX01000080
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
14374
14448
+
Gln
TTG
[ENA]
¡û
>W2011021296
NPEU01000094
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
3622
3696
+
Gln
TTG
[ENA]
¡û
>W2011021413
NPEW01000374
Alphaproteobacteria
Rhodoplanes piscinae DSM 19946 [NPEW]
849
775
-
Gln
TTG
[ENA]
¡û
>W2011021436
NPEX01000080
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
14374
14448
+
Gln
TTG
[ENA]
¡û
>W2011355092
RAQD01000004
Alphaproteobacteria
Pseudorhodoplanes sinuspersici CECT 8374 [RAQD]
654722
654796
+
Gln
TTG
[ENA]
¡û
>W2011495206
RWKV01000008
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
1185119
1185045
-
Gln
TTG
[ENA]
¡û
>W2011577804
SGWU01000001
Alphaproteobacteria
Variibacter gotjawalensis DSM 29671 [SGWU]
1711455
1711381
-
Gln
TTG
[ENA]
¡û
>W2011627350
SMAI01000021
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
33985
33911
-
Gln
TTG
[ENA]
¡û
>W2011649996
SNXY01000009
Alphaproteobacteria
Oharaeibacter diazotrophicus DSM 102969 [SNXY]
280641
280567
-
Gln
TTG
[ENA]
¡û
>W2011950384
UWOC01000055
Alphaproteobacteria
Rhodoplanes piscinae [UWOC]
79397
79323
-
Gln
TTG
[ENA]
¡û
>W2012197345
VWPL01000006
Alphaproteobacteria
Blastochloris sulfoviridis DSM 729 [VWPL]
2863
2789
-
Gln
TTG
[ENA]
¡û
>W2012399021
WNKV01000017
Alphaproteobacteria
Rhodoplanes serenus DSM 18633 [WNKV]
121813
121739
-
Gln
TTG
[ENA]
¡û
>W2012444469
WUJM01000101
Alphaproteobacteria
Oharaeibacter diazotrophicus SM30 [WUJM]
1877
1951
+
Gln
TTG
[ENA]
¡û
>ENV09003756
ADGO01168415
Compost metagenome contig00001
150
224
+
Gln
TTG
[ENA]
¡û
>C211011715
AP023361
Alphaproteobacteria
Terrihabitans soli IZ6 [AP023361]
954884
954958
+
Gln
TTG
-
¡û
>C211176158
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
2051137
2051063
-
Gln
TTG
-
¡û
>C211197451
CP064988
Alphaproteobacteria
Rhodospirillales bacterium [CP064988]
3861610
3861684
+
Gln
TTG
-
¡û
>C231203943
CP085136
Alphaproteobacteria
Lichenihabitans sp. PAMC28606 [CP085136]
369980
369906
-
Gln
TTG
-
¡û
>W2110752142
NHSK01000147
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NHSK]
27612
27538
-
Gln
TTG
[ENA]
¡û
>C161001635
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
630917
630991
+
Gln
TTG
[Ensembl]
¡û
>C161016818
CP007440
Alphaproteobacteria
Rhodoplanes sp. Z2-YC6860 [CP007440]
3061745
3061819
+
Gln
TTG
[Ensembl]
¡û
>C161048039
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
663643
663569
-
Gln
TTG
-
¡û
>W121103230
AKZI01000124
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
19009
18935
-
Gln
TTG
[ENA]
¡û
>W1610753765
LNEV01000006
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
255660
255586
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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