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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39753 (42 seq.)
>C171094555
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1105421
1105510
+
Ser
TGA
-
¡û
>W131222123
AUBA01000005
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
36026
36115
+
Ser
TGA
[ENA]
¡û
>WENV180099542
NMRC01015775
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
105
16
-
Ser
TGA
[ENA]
¡û
>WENV181308495
OFIS01038387
[OFIS] sludge metagenome; sludge
435
347
-
Ser
TGA
[ENA]
¡û
>WENV183725866
PJQF01028407
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
539
450
-
Ser
TGA
[ENA]
¡û
>WENV170574265
FLYM01019423
[FLYM] hot springs metagenome; Sediment
608
697
+
Ser
TGA
[ENA]
¡û
>WENV170574456
FLYM01040549
[FLYM] hot springs metagenome; Sediment
5044
5133
+
Ser
TGA
[ENA]
¡û
>WENV170576199
FRDC01000075
[FRDC] freshwater metagenome; water
1826
1916
+
Ser
TGA
[ENA]
¡û
>WENV170576222
FRDC01000167
[FRDC] freshwater metagenome; water
55311
55222
-
Ser
TGA
[ENA]
¡û
>WENV170577602
FSSH01000257
[FSSH] freshwater metagenome; drinking water
60473
60562
+
Ser
TGA
[ENA]
¡û
>WENV170727567
LULE01000494
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
4856
4945
+
Ser
TGA
[ENA]
¡û
>WENV170729726
LULG01000666
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
81
170
+
Ser
TGA
[ENA]
¡û
>WENV170734549
LULK01009505
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
2054
1965
-
Ser
TGA
[ENA]
¡û
>WENV170742676
LULV01000120
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
53083
53172
+
Ser
TGA
[ENA]
¡û
>WENV170745764
LULY01040083
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
369
458
+
Ser
TGA
[ENA]
¡û
>WENV170761395
LUMV01000189
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
17618
17529
-
Ser
TGA
[ENA]
¡û
>W1910548699
FZOS01000001
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
8047
7958
-
Ser
TGA
[ENA]
¡û
>W1910744380
MIAM01000015
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
58831
58920
+
Ser
TGA
[ENA]
¡û
>C151051505
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2385478
2385567
+
Ser
TGA
-
¡û
>W2010430460
FZOS01000001
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
8047
7958
-
Ser
TGA
[ENA]
¡û
>W2010877812
MIAM01000015
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
58831
58920
+
Ser
TGA
[ENA]
¡û
>W2011320766
QWLV01000009
Alphaproteobacteria
Sphingomonas sp. ZDH117 [QWLV]
137679
137768
+
Ser
TGA
[ENA]
¡û
>W2012041248
VIRF01000058
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
249775
249686
-
Ser
TGA
[ENA]
¡û
>W2012081397
VLKJ01000007
Alphaproteobacteria
Novosphingobium taihuense CGMCC 1.3432 [VLKJ]
195181
195270
+
Ser
TGA
[ENA]
¡û
>W2110016775
BLTI01000008
Alphaproteobacteria
Novosphingobium sp. PY1 [BLTI]
89576
89665
+
Ser
TGA
[ENA]
¡û
>W2110050105
BMZD01000003
Alphaproteobacteria
Novosphingobium arvoryzae KCTC 32422 [BMZD]
278547
278458
-
Ser
TGA
[ENA]
¡û
>W1510019761
BBXA01000031
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
74604
74693
+
Ser
TGA
[ENA]
¡û
>C231245114
CP087719
Alphaproteobacteria
Roseomonas sp. OT10 [CP087719]
1903804
1903893
+
Ser
TGA
-
¡û
>C241282399
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1615994
1615905
-
Ser
TGA
-
¡û
>C241368984
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
2292008
2291919
-
Ser
TGA
-
¡û
>C241371547
CP142394
Alphaproteobacteria
Sphingopyxis chilensis S37 [CP142394]
1911673
1911584
-
Ser
TGA
-
¡û
>W2310022521
BSFC01000024
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
179018
179107
+
Ser
TGA
[ENA]
¡û
>C161043651
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1889556
1889645
+
Ser
TGA
[Ensembl]
¡û
>C161055681
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
2219304
2219215
-
Ser
TGA
-
¡û
>W1610590995
LDRW01000024
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
3762
3673
-
Ser
TGA
[ENA]
¡û
>W1610719167
LLZQ01000001
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
342845
342934
+
Ser
TGA
[ENA]
¡û
>W1610728569
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
977401
977312
-
Ser
TGA
[ENA]
¡û
>W1610729780
LMIG01000005
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
532942
533031
+
Ser
TGA
[ENA]
¡û
>W1610771180
LNRY01000003
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
397160
397071
-
Ser
TGA
[ENA]
¡û
>W1610939085
LURF01000055
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
2054
1965
-
Ser
TGA
[ENA]
¡û
>W1710576186
FOZV01000004
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
305174
305085
-
Ser
TGA
[ENA]
¡û
>W1710604562
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
818929
818840
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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