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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400411 (83 seq.)
>W1710861586
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1381
1307
-
Thr
GGT
[ENA]
¡û
>W1711219973
LXPX01000117
Betaproteobacteria
Achromobacter insolitus KCJK1731 [LXPX]
124012
124086
+
Thr
GGT
[ENA]
¡û
>W1711254496
LYQJ01000064
Betaproteobacteria
Achromobacter insolitus KCJK1724 [LYQJ]
124017
124091
+
Thr
GGT
[ENA]
¡û
>W1711466749
MJMP01000040
Betaproteobacteria
Achromobacter xylosoxidans [MJMP]
774
700
-
Thr
GGT
[ENA]
¡û
>W1711723124
MTLG01000125
Betaproteobacteria
Achromobacter xylosoxidans [MTLG]
178
104
-
Thr
GGT
[ENA]
¡û
>W131236698
AUMO01000043
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
29696
29622
-
Thr
GGT
[ENA]
¡û
>WENV180012053
FLSK01149315
[FLSK] metagenome; saliva
267
193
-
Thr
GGT
[ENA]
¢þ
>WENV180025296
FTIN01161554
[FTIN] metagenome; soil
156
82
-
Thr
GGT
[ENA]
¢þ
>WENV180030740
FTJN01008157
[FTJN] metagenome; soil
548
474
-
Thr
GGT
[ENA]
¢þ
>WENV180032733
FTKD01000219
[FTKD] metagenome; soil
351
277
-
Thr
GGT
[ENA]
¢þ
>WENV180035142
FTKT01002765
[FTKT] metagenome; soil
5963
6037
+
Thr
GGT
[ENA]
¢þ
>WENV180311156
OBJT01138231
[OBJT] soil metagenome; soil
32
106
+
Thr
GGT
[ENA]
¢þ
>WENV180591543
OCOV01042675
[OCOV] marine metagenome; ENVO:01000301
414
340
-
Thr
GGT
[ENA]
¢þ
>WENV180782267
ODIP01049828
[ODIP] human metagenome; G_DNA_Supragingival plaque
280
354
+
Thr
GGT
[ENA]
¢þ
>WENV180823703
ODJW01118293
[ODJW] human metagenome; G_DNA_Supragingival plaque
229
303
+
Thr
GGT
[ENA]
¢þ
>WENV180831664
ODKC01000027
[ODKC] human metagenome; G_DNA_Supragingival plaque
144018
143944
-
Thr
GGT
[ENA]
¢þ
>WENV180841926
ODKK01028380
[ODKK] human metagenome; G_DNA_Buccal mucosa
80
154
+
Thr
GGT
[ENA]
¢þ
>WENV180844419
ODKN01111333
[ODKN] human metagenome; G_DNA_Supragingival plaque
159
233
+
Thr
GGT
[ENA]
¢þ
>WENV180862294
ODLE01070662
[ODLE] human metagenome; G_DNA_Tongue dorsum
126
52
-
Thr
GGT
[ENA]
¢þ
>WENV180880569
ODLZ01032262
[ODLZ] human metagenome; G_DNA_Tongue dorsum
948
1022
+
Thr
GGT
[ENA]
¢þ
>WENV180889862
ODMN01195156
[ODMN] human metagenome; G_DNA_Supragingival plaque
124
198
+
Thr
GGT
[ENA]
¢þ
>WENV180978015
ODUZ01014181
[ODUZ] human metagenome; G_DNA_Tongue dorsum
1333
1407
+
Thr
GGT
[ENA]
¢þ
>WENV180981211
ODVE01010633
[ODVE] human metagenome; G_DNA_Supragingival plaque
2433
2507
+
Thr
GGT
[ENA]
¢þ
>WENV181009774
ODWE01205381
[ODWE] human metagenome; G_DNA_Supragingival plaque
3
77
+
Thr
GGT
[ENA]
¢þ
>WENV181051158
ODYD01222864
[ODYD] human metagenome; G_DNA_Supragingival plaque
115
189
+
Thr
GGT
[ENA]
¢þ
>WENV181160929
OEIK01063580
[OEIK] human metagenome; G_DNA_Supragingival plaque
334
408
+
Thr
GGT
[ENA]
¢þ
>WENV181163448
OEIQ01034953
[OEIQ] soil metagenome; soil
187
261
+
Thr
GGT
[ENA]
¢þ
>WENV181375380
OFQY01081047
[OFQY] wastewater metagenome; Exp Tend VB 10WW
188
114
-
Thr
GGT
[ENA]
¢þ
>WENV181412349
OGCI01127568
[OGCI] hot springs metagenome; Hot spring water
277
203
-
Thr
GGT
[ENA]
¢þ
>W141187573
AYMF01000034
Betaproteobacteria
Achromobacter sp. DH1f DH1f [AYMF]
152
78
-
Thr
GGT
[ENA]
¡û
>W141202779
AZHL01000282
Betaproteobacteria
Achromobacter xylosoxidans X02736 [AZHL]
6539
6613
+
Thr
GGT
[ENA]
¡û
>WENV183703656
PDVJ01033122
[PDVJ] alkali sediment metagenome; glacial lake sediment
845
771
-
Thr
GGT
[ENA]
¢þ
>WENV183730098
PJTR01000618
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
253
179
-
Thr
GGT
[ENA]
¢þ
>WENV183737302
PJUD01003210
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4064
3990
-
Thr
GGT
[ENA]
¢þ
>WENV170146237
CENZ01042328
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
184
110
-
Thr
GGT
[ENA]
¢þ
>WENV170473737
CEVH01067949
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
330
404
+
Thr
GGT
[ENA]
¢þ
>WENV170523796
CEWG01248182
[CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
183
-
Thr
GGT
[ENA]
¢þ
>WENV170553335
CXWK01015294
[CXWK] wastewater metagenome; activated sludge
812
738
-
Thr
GGT
[ENA]
¢þ
>WENV170652596
JRYH01007799
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
355
429
+
Thr
GGT
[ENA]
¢þ
>WENV170866822
MDTB01137761
[MDTB] marine metagenome; seawater
218
144
-
Thr
GGT
[ENA]
¢þ
>WENV170872223
MDTB01215688
[MDTB] marine metagenome; seawater
19982
19908
-
Thr
GGT
[ENA]
¢þ
>WENV170966372
MTEX01008120
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
5411
5485
+
Thr
GGT
[ENA]
¢þ
>WENV170966513
MTEX01012226
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
1747
1821
+
Thr
GGT
[ENA]
¢þ
>C181064517
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
842083
842157
+
Thr
GGT
-
¡û
>C181078156
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
6289479
6289405
-
Thr
GGT
-
¡û
>C181144532
CP026973
Betaproteobacteria
Achromobacter insolitus FDAARGOS_88 [CP026973]
5127222
5127296
+
Thr
GGT
-
¡û
>C191205186
LR134302
Betaproteobacteria
Achromobacter spanius NCTC13519 [LR134302]
2496943
2496869
-
Thr
GGT
-
¡û
>W1910646071
LWKV01000002
Betaproteobacteria
Achromobacter sp. HZ01 [LWKV]
1525089
1525163
+
Thr
GGT
[ENA]
¡û
>W1910699350
MERG01000225
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 [MERG]
212
138
-
Thr
GGT
[ENA]
¡û
>W1911566179
PCOQ01000002
Betaproteobacteria
Achromobacter sp. MYb9 [PCOQ]
109932
110006
+
Thr
GGT
[ENA]
¡û
>W1810110920
PHIH01000025
Betaproteobacteria
Achromobacter ruhlandii Ar319 [PHIH]
99224
99298
+
Thr
GGT
[ENA]
¡û
>W1810270642
PREU01000002
Betaproteobacteria
Achromobacter spanius 6 [PREU]
124809
124883
+
Thr
GGT
[ENA]
¡û
>W1810659021
QJJS01000033
Betaproteobacteria
Sphaerotilus hippei DSM 566 [QJJS]
241
167
-
Thr
GGT
[ENA]
¡û
>W1810720796
QNRM01000003
Betaproteobacteria
Achromobacter marplatensis CECT 7342 [QNRM]
569636
569562
-
Thr
GGT
[ENA]
¡û
>C151000901
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
663636
663710
+
Thr
GGT
[Ensembl]
¡û
>C151090208
CP012046
Betaproteobacteria
Achromobacter xylosoxidans MN001 [CP012046]
5824905
5824831
-
Thr
GGT
[Ensembl]
¡û
>ENV09000032
ABSN01001708
Freshwater sediment metagenome lwFormaldehyde_C1
1199
1125
-
Thr
GGT
[ENA]
¡û
>W10115850
ADMS01000018
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
129
55
-
Thr
GGT
[ENA]
¡û
>W11120347
ADMS01000018
Betaproteobacteria
Achromobacter piechaudii ATCC 43553 [ADMS]
129
55
-
Thr
GGT
[ENA]
¡û
>W1511433168
JUGZ01000042
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
417
343
-
Thr
GGT
[ENA]
¡û
>W1511591839
LBHW01000025
Betaproteobacteria
Achromobacter sp. LC458 [LBHW]
41447
41373
-
Thr
GGT
[ENA]
¡û
>W1511642080
LDVK01000276
Betaproteobacteria
Achromobacter xylosoxidans A9 [LDVK]
6561
6635
+
Thr
GGT
[ENA]
¡û
>W1511642113
LDVL01000267
Betaproteobacteria
Achromobacter xylosoxidans A10 [LDVL]
6563
6637
+
Thr
GGT
[ENA]
¡û
>W1511642143
LDVM01000416
Betaproteobacteria
Achromobacter xylosoxidans A11 [LDVM]
4883
4957
+
Thr
GGT
[ENA]
¡û
>W1511642165
LDVN01000038
Betaproteobacteria
Achromobacter xylosoxidans A12 [LDVN]
31703
31777
+
Thr
GGT
[ENA]
¡û
>W11172148
AFRQ01000039
Betaproteobacteria
Achromobacter insuavis AXX-A [AFRQ]
592
518
-
Thr
GGT
[ENA]
¡û
>C161065043
CP014028
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_150 [CP014028]
2776060
2775986
-
Thr
GGT
-
¡û
>W121060083
AJFF01000039
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
154
80
-
Thr
GGT
[ENA]
¡û
>W1610047272
BBDD01000360
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
2787
2861
+
Thr
GGT
[ENA]
¡û
>W1610076254
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199546
199620
+
Thr
GGT
[ENA]
¡û
>W1610093592
CYTC01000001
Betaproteobacteria
Achromobacter kerstersii ATCC31444 [CYTC]
559636
559562
-
Thr
GGT
[ENA]
¡û
>W1610093673
CYTD01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
166314
166388
+
Thr
GGT
[ENA]
¡û
>W1610093929
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114535
114609
+
Thr
GGT
[ENA]
¡û
>W1610094311
CYTQ01000019
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
114648
114722
+
Thr
GGT
[ENA]
¡û
>W1610094461
CYTT01000021
Betaproteobacteria
Achromobacter sp. 2789STDY5608628 [CYTT]
263
189
-
Thr
GGT
[ENA]
¡û
>W1610723932
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1381
1307
-
Thr
GGT
[ENA]
¡û
>W1611004445
LXPX01000117
Betaproteobacteria
Achromobacter insolitus KCJK1731 [LXPX]
124012
124086
+
Thr
GGT
[ENA]
¡û
>W1710043877
BBDD01000360
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
2787
2861
+
Thr
GGT
[ENA]
¡û
>W1710074069
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199546
199620
+
Thr
GGT
[ENA]
¡û
>W1710096716
CYTD01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
166314
166388
+
Thr
GGT
[ENA]
¡û
>W1710096972
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114535
114609
+
Thr
GGT
[ENA]
¡û
>W1710097312
CYTQ01000019
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
114648
114722
+
Thr
GGT
[ENA]
¡û
>W1710097462
CYTT01000021
Betaproteobacteria
Achromobacter sp. 2789STDY5608628 [CYTT]
263
189
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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