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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400793 (11 seq.)
>A171002956
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1343153
1343080
-
Ala
CGC
-
¡û
>A179000317
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1734130
1734039
-
Ala
CGC
-
¡û
>A17A000552
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
183268
183179
-
Ala
CGC
-
¡û
>A173000013
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1664444
1664536
+
Ala
CGC
-
¡û
>WENV181407210
OGCG01010629
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
655
726
+
Ala
CGC
[ENA]
¢þ
>At0216
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
303676
303602
-
Ala
CGC
[Ensembl]
¡û
>At0240
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
704452
704523
+
Ala
CGC
[Ensembl]
¡û
>WENV170574112
FLYM01006892
[FLYM] hot springs metagenome; Sediment
1729
1655
-
Ala
CGC
[ENA]
¢þ
>W1910595844
JZWT01000039
Thermoproteota
Thermoproteus sp. AZ2 [JZWT]
8251
8178
-
Ala
CGC
[ENA]
¡û
>W1911075110
NMUE01000004
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
65914
65988
+
Ala
CGC
[ENA]
¡û
>W1911075151
NMUF01000061
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
56
130
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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