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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403758 (95 seq.)
>W1710906835
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
599905
599833
-
Thr
GGT
[ENA]
¡û
>W1710990880
LPXG01000022
Bacteroidota
Elizabethkingia anophelis [LPXG]
8058
7986
-
Thr
GGT
[ENA]
¡û
>W1711117575
LUDG01000002
Bacteroidota
Riemerella anatipestifer [LUDG]
38430
38358
-
Thr
GGT
[ENA]
¡û
>W1711117612
LUDH01000002
Bacteroidota
Riemerella anatipestifer [LUDH]
38347
38275
-
Thr
GGT
[ENA]
¡û
>W1711117654
LUDI01000005
Bacteroidota
Riemerella anatipestifer [LUDI]
33471
33399
-
Thr
GGT
[ENA]
¡û
>W1711117690
LUDJ01000011
Bacteroidota
Riemerella anatipestifer [LUDJ]
9452
9524
+
Thr
GGT
[ENA]
¡û
>W1711117720
LUDK01000002
Bacteroidota
Riemerella anatipestifer [LUDK]
38354
38282
-
Thr
GGT
[ENA]
¡û
>W1711117751
LUDL01000002
Bacteroidota
Riemerella anatipestifer [LUDL]
331359
331431
+
Thr
GGT
[ENA]
¡û
>W1711117784
LUDM01000001
Bacteroidota
Riemerella anatipestifer [LUDM]
432169
432241
+
Thr
GGT
[ENA]
¡û
>W1711117823
LUDN01000001
Bacteroidota
Riemerella anatipestifer [LUDN]
38425
38353
-
Thr
GGT
[ENA]
¡û
>W1711117874
LUDO01000002
Bacteroidota
Riemerella anatipestifer [LUDO]
38429
38357
-
Thr
GGT
[ENA]
¡û
>W1711117906
LUDP01000002
Bacteroidota
Riemerella anatipestifer [LUDP]
331298
331370
+
Thr
GGT
[ENA]
¡û
>W1711117943
LUDQ01000002
Bacteroidota
Riemerella anatipestifer [LUDQ]
366235
366307
+
Thr
GGT
[ENA]
¡û
>W1711117964
LUDR01000002
Bacteroidota
Riemerella anatipestifer [LUDR]
208121
208193
+
Thr
GGT
[ENA]
¡û
>W1711118025
LUDS01000009
Bacteroidota
Riemerella anatipestifer [LUDS]
38429
38357
-
Thr
GGT
[ENA]
¡û
>W1711118036
LUDT01000012
Bacteroidota
Riemerella anatipestifer [LUDT]
13998
13926
-
Thr
GGT
[ENA]
¡û
>W1711118090
LUDU01000002
Bacteroidota
Riemerella anatipestifer [LUDU]
38407
38335
-
Thr
GGT
[ENA]
¡û
>W1711118126
LUDV01000002
Bacteroidota
Riemerella anatipestifer [LUDV]
38266
38194
-
Thr
GGT
[ENA]
¡û
>W131188326
ASAN01000011
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
16352
16424
+
Thr
GGT
[ENA]
¡û
>W1711300442
MAGZ01000004
Bacteroidota
Elizabethkingia meningoseptica [MAGZ]
162029
162101
+
Thr
GGT
[ENA]
¡û
>W1711300569
MAHC01000010
Bacteroidota
Elizabethkingia meningoseptica [MAHC]
135975
135903
-
Thr
GGT
[ENA]
¡û
>W1711300670
MAHE01000015
Bacteroidota
Elizabethkingia meningoseptica [MAHE]
167077
167149
+
Thr
GGT
[ENA]
¡û
>W1711300705
MAHF01000010
Bacteroidota
Elizabethkingia meningoseptica [MAHF]
167023
167095
+
Thr
GGT
[ENA]
¡û
>W1711300829
MAHI01000007
Bacteroidota
Elizabethkingia meningoseptica [MAHI]
330628
330556
-
Thr
GGT
[ENA]
¡û
>W1711301483
MAHX01000015
Bacteroidota
Elizabethkingia occulta G4070 [MAHX]
155842
155914
+
Thr
GGT
[ENA]
¡û
>W1711301568
MAHZ01000016
Bacteroidota
Elizabethkingia meningoseptica [MAHZ]
166030
166102
+
Thr
GGT
[ENA]
¡û
>W1711301607
MAIA01000011
Bacteroidota
Elizabethkingia meningoseptica [MAIA]
402719
402647
-
Thr
GGT
[ENA]
¡û
>W1711324481
MBDR01000013
Bacteroidota
Elizabethkingia occulta F8124 [MBDR]
93952
93880
-
Thr
GGT
[ENA]
¡û
>W1711344628
MCJH01000005
Bacteroidota
Elizabethkingia meningoseptica [MCJH]
168889
168961
+
Thr
GGT
[ENA]
¡û
>W1711373060
MDTY01000006
Bacteroidota
Elizabethkingia meningoseptica [MDTY]
168889
168961
+
Thr
GGT
[ENA]
¡û
>W1711373102
MDTZ01000008
Bacteroidota
Elizabethkingia meningoseptica [MDTZ]
388738
388666
-
Thr
GGT
[ENA]
¡û
>W131241092
BARD01000015
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
15728
15800
+
Thr
GGT
[ENA]
¡û
>C171015053
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
1445939
1446011
+
Thr
GGT
-
¡û
>C171048233
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
315682
315610
-
Thr
GGT
-
¡û
>C171048332
CP016378
Bacteroidota
Elizabethkingia meningoseptica G4120 [CP016378]
754335
754263
-
Thr
GGT
-
¡û
>W131059217
ANGF01000017
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
2974
2902
-
Thr
GGT
[ENA]
¡û
>WENV180003785
FLRO01042258
[FLRO] metagenome; saliva
115
43
-
Thr
GGT
[ENA]
¢þ
>WENV180008051
FLSB01002897
[FLSB] metagenome; saliva
27892
27964
+
Thr
GGT
[ENA]
¢þ
>WENV180758987
ODHY01000039
[ODHY] human metagenome; G_DNA_Buccal mucosa
45025
44953
-
Thr
GGT
[ENA]
¢þ
>WENV180794048
ODIY01000539
[ODIY] human metagenome; G_DNA_Buccal mucosa
659
587
-
Thr
GGT
[ENA]
¢þ
>WENV180829845
ODKB01000010
[ODKB] human metagenome; G_DNA_Tongue dorsum
141166
141094
-
Thr
GGT
[ENA]
¢þ
>WENV180862634
ODLF01000603
[ODLF] human metagenome; G_DNA_Buccal mucosa
81
153
+
Thr
GGT
[ENA]
¢þ
>WENV180864798
ODLI01000017
[ODLI] human metagenome; G_DNA_Buccal mucosa
14386
14314
-
Thr
GGT
[ENA]
¢þ
>WENV180937126
ODTV01016690
[ODTV] human metagenome; G_DNA_Buccal mucosa
342
414
+
Thr
GGT
[ENA]
¢þ
>WENV180947493
ODUF01011608
[ODUF] human metagenome; G_DNA_Supragingival plaque
100
28
-
Thr
GGT
[ENA]
¢þ
>WENV180956161
ODUK01000599
[ODUK] human metagenome; G_DNA_Stool
40639
40567
-
Thr
GGT
[ENA]
¢þ
>WENV180974646
ODUX01033845
[ODUX] human metagenome; G_DNA_Buccal mucosa
303
231
-
Thr
GGT
[ENA]
¢þ
>WENV181027628
ODXD01017622
[ODXD] human metagenome; G_DNA_Buccal mucosa
571
499
-
Thr
GGT
[ENA]
¢þ
>WENV181093669
OEBW01006180
[OEBW] human metagenome; G_DNA_Stool
1314
1242
-
Thr
GGT
[ENA]
¢þ
>WENV181430476
OGCZ01004994
[OGCZ] metagenome; Human gut stool
1926
1998
+
Thr
GGT
[ENA]
¢þ
>WENV181451444
OGDY01006019
[OGDY] metagenome; Human gut stool
6877
6949
+
Thr
GGT
[ENA]
¢þ
>WENV182274870
OHUK01018682
[OHUK] human gut metagenome; feces
411
339
-
Thr
GGT
[ENA]
¢þ
>WENV182885354
OKSC01005443
[OKSC] human gut metagenome; faeces
6387
6459
+
Thr
GGT
[ENA]
¢þ
>WENV170063177
CDZK01007378
[CDZK] gut metagenome; human stools
7255
7327
+
Thr
GGT
[ENA]
¢þ
>C181016517
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
315682
315610
-
Thr
GGT
-
¡û
>C181209481
LS483376
Bacteroidota
Elizabethkingia meningoseptica NCTC10016 [LS483376]
2299470
2299542
+
Thr
GGT
-
¡û
>C181226355
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
1640626
1640698
+
Thr
GGT
-
¡û
>C191065591
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
1799343
1799415
+
Thr
GGT
-
¡û
>C191185720
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
1737371
1737443
+
Thr
GGT
-
¡û
>W1910285385
FRFB01000003
Bacteroidota
Elizabethkingia meningoseptica [FRFB]
244301
244229
-
Thr
GGT
[ENA]
¡û
>W1910341240
FTPF01000004
Bacteroidota
Elizabethkingia meningoseptica [FTPF]
166616
166688
+
Thr
GGT
[ENA]
¡û
>W1910342507
FTRA01000001
Bacteroidota
Elizabethkingia meningoseptica 58-80 [FTRA]
168047
168119
+
Thr
GGT
[ENA]
¡û
>W1911615644
PPEC01000002
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
9550
9478
-
Thr
GGT
[ENA]
¡û
>W1810191543
PKKR01000002
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
335809
335881
+
Thr
GGT
[ENA]
¡û
>C151010296
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
826947
826875
-
Thr
GGT
[Ensembl]
¡û
>C151018473
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
951936
951864
-
Thr
GGT
-
¡û
>C151025734
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
1630343
1630415
+
Thr
GGT
[Ensembl]
¡û
>C151025774
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
1676970
1677042
+
Thr
GGT
[Ensembl]
¡û
>C11118447
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
1639087
1639159
+
Thr
GGT
[Ensembl]
¡û
>C11118510
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
680024
679952
-
Thr
GGT
[Ensembl]
¡û
>W11141042
AENH01000001
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
333133
333205
+
Thr
GGT
[ENA]
¡û
>W1511584135
LAVB01000010
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
270319
270391
+
Thr
GGT
[ENA]
¡û
>C121012026
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
1799759
1799831
+
Thr
GGT
-
¡û
>C131006696
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
397649
397577
-
Thr
GGT
[Ensembl]
¡û
>C131011639
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
54791
54719
-
Thr
GGT
[Ensembl]
¡û
>W1610507441
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
165862
165934
+
Thr
GGT
[ENA]
¡û
>W1610765849
LNOH01000021
Bacteroidota
Elizabethkingia meningoseptica [LNOH]
599905
599833
-
Thr
GGT
[ENA]
¡û
>W1610845552
LPXG01000022
Bacteroidota
Elizabethkingia anophelis [LPXG]
8058
7986
-
Thr
GGT
[ENA]
¡û
>W1610928934
LUDG01000002
Bacteroidota
Riemerella anatipestifer [LUDG]
38430
38358
-
Thr
GGT
[ENA]
¡û
>W1610928971
LUDH01000002
Bacteroidota
Riemerella anatipestifer [LUDH]
38347
38275
-
Thr
GGT
[ENA]
¡û
>W1610929013
LUDI01000005
Bacteroidota
Riemerella anatipestifer [LUDI]
33471
33399
-
Thr
GGT
[ENA]
¡û
>W1610929049
LUDJ01000011
Bacteroidota
Riemerella anatipestifer [LUDJ]
9452
9524
+
Thr
GGT
[ENA]
¡û
>W1610929079
LUDK01000002
Bacteroidota
Riemerella anatipestifer [LUDK]
38354
38282
-
Thr
GGT
[ENA]
¡û
>W1610929110
LUDL01000002
Bacteroidota
Riemerella anatipestifer [LUDL]
331359
331431
+
Thr
GGT
[ENA]
¡û
>W1610929143
LUDM01000001
Bacteroidota
Riemerella anatipestifer [LUDM]
432169
432241
+
Thr
GGT
[ENA]
¡û
>W1610929182
LUDN01000001
Bacteroidota
Riemerella anatipestifer [LUDN]
38425
38353
-
Thr
GGT
[ENA]
¡û
>W1610929233
LUDO01000002
Bacteroidota
Riemerella anatipestifer [LUDO]
38429
38357
-
Thr
GGT
[ENA]
¡û
>W1610929265
LUDP01000002
Bacteroidota
Riemerella anatipestifer [LUDP]
331298
331370
+
Thr
GGT
[ENA]
¡û
>W1610929302
LUDQ01000002
Bacteroidota
Riemerella anatipestifer [LUDQ]
366235
366307
+
Thr
GGT
[ENA]
¡û
>W1610929323
LUDR01000002
Bacteroidota
Riemerella anatipestifer [LUDR]
208121
208193
+
Thr
GGT
[ENA]
¡û
>W1610929384
LUDS01000009
Bacteroidota
Riemerella anatipestifer [LUDS]
38429
38357
-
Thr
GGT
[ENA]
¡û
>W1610929395
LUDT01000012
Bacteroidota
Riemerella anatipestifer [LUDT]
13998
13926
-
Thr
GGT
[ENA]
¡û
>W1610929449
LUDU01000002
Bacteroidota
Riemerella anatipestifer [LUDU]
38407
38335
-
Thr
GGT
[ENA]
¡û
>W1610929485
LUDV01000002
Bacteroidota
Riemerella anatipestifer [LUDV]
38266
38194
-
Thr
GGT
[ENA]
¡û
>W1710499659
FLSV01000006
Bacteroidota
Elizabethkingia meningoseptica [FLSV]
165862
165934
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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