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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403915 (63 seq.)
>W1710802240
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3463
3535
+
Thr
GGT
[ENA]
¡û
>W1711072020
LSHB01000073
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
200
128
-
Thr
GGT
[ENA]
¡û
>W131211915
ATNM01000091
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
116876
116804
-
Thr
GGT
[ENA]
¡û
>W131220966
AUAA01000047
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
10081
10007
-
Thr
GGT
[ENA]
¡û
>W131227776
AUFK01000019
Bacteroidota
Epilithonimonas caeni DSM 17710 [AUFK]
147679
147607
-
Thr
GGT
[ENA]
¡û
>W131053372
AMZY02000010
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
311968
311896
-
Thr
GGT
[ENA]
¡û
>W131223086
AUBU01000002
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
57796
57868
+
Thr
GGT
[ENA]
¡û
>W131223127
AUBV01000003
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
327181
327255
+
Thr
GGT
[ENA]
¡û
>W131223227
AUBX01000016
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
305570
305642
+
Thr
GGT
[ENA]
¡û
>W131146340
AQHR01000107
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
149614
149540
-
Thr
GGT
[ENA]
¡û
>W131167773
ARDN01000011
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
130852
130926
+
Thr
GGT
[ENA]
¡û
>W1711505109
MKVE01000017
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
359021
359093
+
Thr
GGT
[ENA]
¡û
>C171063316
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
1914954
1915028
+
Thr
GGT
-
¡û
>w023323
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
466469
466393
-
Thr
GGT
[ENA]
¡û
>W141039116
ALWO02000011
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
192892
192820
-
Thr
GGT
[ENA]
¡û
>W141043706
AMGM01000003
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
74069
73997
-
Thr
GGT
[ENA]
¡û
>WENV181233825
OFET01000126
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
60655
60727
+
Thr
GGT
[ENA]
¢þ
>WENV181401968
OFTY01000004
[OFTY] sludge metagenome; sludge
398562
398634
+
Thr
GGT
[ENA]
¢þ
>W141200462
AYXY01000001
Bacteroidota
Zhouia amylolytica AD3 [AYXY]
347139
347211
+
Thr
GGT
[ENA]
¡û
>W141278915
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
3819792
3819864
+
Thr
GGT
[ENA]
¡û
>WENV183734513
PJTZ01013517
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
363
435
+
Thr
GGT
[ENA]
¢þ
>WENV183738486
PJUE01000005
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
109921
109849
-
Thr
GGT
[ENA]
¢þ
>WENV183740599
PJUF01003992
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
3148
3220
+
Thr
GGT
[ENA]
¢þ
>WENV170192612
CEPF01034446
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
196
124
-
Thr
GGT
[ENA]
¢þ
>C181187368
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
2053465
2053393
-
Thr
GGT
-
¡û
>C191175215
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
273571
273499
-
Thr
GGT
-
¡û
>C191189190
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
274532
274460
-
Thr
GGT
-
¡û
>W141727222
JNCP01000099
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
18733
18659
-
Thr
GGT
[ENA]
¡û
>W141806179
JPLY01000004
Bacteroidota
Epilithonimonas lactis [JPLY]
398482
398554
+
Thr
GGT
[ENA]
¡û
>W141806215
JPLZ01000006
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
919034
919106
+
Thr
GGT
[ENA]
¡û
>W1910548305
FZOK01000008
Bacteroidota
Belliella buryatensis 5C [FZOK]
110659
110587
-
Thr
GGT
[ENA]
¡û
>W1910578006
JUIX01000014
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
15523
15451
-
Thr
GGT
[ENA]
¡û
>W1910932893
NIUC01000002
Bacteroidota
Algoriphagus formosus XAY3209 [NIUC]
594059
593987
-
Thr
GGT
[ENA]
¡û
>W1911701312
QNUG01000002
Bacteroidota
Epilithonimonas hispanica KCTC 22104 [QNUG]
18123
18051
-
Thr
GGT
[ENA]
¡û
>W1911708539
QOVY01000019
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
25218
25146
-
Thr
GGT
[ENA]
¡û
>W1810365008
PVTR01000008
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
168926
168854
-
Thr
GGT
[ENA]
¡û
>W1810400582
PYGF01000003
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
116828
116756
-
Thr
GGT
[ENA]
¡û
>W1810531993
QCXY01000009
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
66504
66432
-
Thr
GGT
[ENA]
¡û
>W1810695737
QLNV01000004
Bacteroidota
Sinomicrobium sp. N-1-3-6 [QLNV]
296614
296686
+
Thr
GGT
[ENA]
¡û
>C151090013
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
3027220
3027292
+
Thr
GGT
[Ensembl]
¡û
>SRA1051615
SRR035098.38866
454 Sequencing (SRP001819)
287
215
-
Thr
GGT
[SRA]
>C11105720
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
3016384
3016456
+
Thr
GGT
[Ensembl]
¡û
>C121010184
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
1802838
1802910
+
Thr
GGT
[Ensembl]
¡û
>C161046169
CP012836
Bacteroidota
Algoriphagus sanaruensis M8-2 [CP012836]
1231288
1231362
+
Thr
GGT
[Ensembl]
¡û
>W121064849
AJMQ01000109
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
65829
65757
-
Thr
GGT
[ENA]
¡û
>W121071517
AJYA01000002
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
41126
41200
+
Thr
GGT
[ENA]
¡û
>C131003321
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
276002
275928
-
Thr
GGT
[Ensembl]
¡û
>W1610666097
LJXT01000082
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
3463
3535
+
Thr
GGT
[ENA]
¡û
>W1610911280
LSHB01000073
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
200
128
-
Thr
GGT
[ENA]
¡û
>W1710514891
FNBH01000002
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
510441
510369
-
Thr
GGT
[ENA]
¡û
>W1710519760
FNEZ01000001
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
15731
15657
-
Thr
GGT
[ENA]
¡û
>W1710540843
FNXE01000016
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
18193
18119
-
Thr
GGT
[ENA]
¡û
>W1710542626
FNZH01000003
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
668470
668542
+
Thr
GGT
[ENA]
¡û
>W1710550490
FOFI01000001
Bacteroidota
Epilithonimonas lactis [FOFI]
441986
442058
+
Thr
GGT
[ENA]
¡û
>W1710570726
FOVI01000010
Bacteroidota
Paenimyroides ummariense [FOVI]
84994
85068
+
Thr
GGT
[ENA]
¡û
>W1710571388
FOVW01000004
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
309671
309743
+
Thr
GGT
[ENA]
¡û
>W1710576792
FPAG01000006
Bacteroidota
Zhouia amylolytica [FPAG]
55522
55594
+
Thr
GGT
[ENA]
¡û
>W1710589874
FRAM01000002
Bacteroidota
Epilithonimonas mollis molle [FRAM]
721916
721990
+
Thr
GGT
[ENA]
¡û
>W1710593070
FRCY01000009
Bacteroidota
Cyclobacterium lianum [FRCY]
84056
84128
+
Thr
GGT
[ENA]
¡û
>W1710593742
FRXN01000004
Bacteroidota
Algoriphagus zhangzhouensis [FRXN]
343660
343732
+
Thr
GGT
[ENA]
¡û
>W1710594238
FSRC01000004
Bacteroidota
Algoriphagus halophilus [FSRC]
321761
321833
+
Thr
GGT
[ENA]
¡û
>W1710594746
FSRK01000003
Bacteroidota
Epilithonimonas zeae [FSRK]
133467
133393
-
Thr
GGT
[ENA]
¡û
>W1710599287
FTOP01000008
Bacteroidota
Belliella pelovolcani [FTOP]
100018
99946
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK