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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411995 (65 seq.)
>A171000416
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
587543
587473
-
Gly
TCC
-
¡û
>A171007191
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
1494517
1494587
+
Gly
TCC
-
¡û
>A171007548
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
1496910
1496980
+
Gly
TCC
-
¡û
>A171007640
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
388193
388123
-
Gly
TCC
-
¡û
>WENV180095415
MTBK01067174
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1542
1469
-
Gly
TCC
[ENA]
¢þ
>WENV180096280
MTBK01120870
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
162
92
-
Gly
TCC
[ENA]
¢þ
>WENV180097248
MTBK01176399
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
3816
3746
-
Gly
TCC
[ENA]
¢þ
>WENV181230184
OFEK01000396
[OFEK] activated sludge metagenome; Anaerobic digester
28642
28572
-
Gly
TCC
[ENA]
¢þ
>WENV181230695
OFEK01002409
[OFEK] activated sludge metagenome; Anaerobic digester
8975
9047
+
Gly
TCC
[ENA]
¢þ
>WENV181230880
OFEK01004727
[OFEK] activated sludge metagenome; Anaerobic digester
4723
4653
-
Gly
TCC
[ENA]
¢þ
>WENV181231110
OFEK01009978
[OFEK] activated sludge metagenome; Anaerobic digester
2837
2767
-
Gly
TCC
[ENA]
¢þ
>WENV181231195
OFEK01013258
[OFEK] activated sludge metagenome; Anaerobic digester
2453
2523
+
Gly
TCC
[ENA]
¢þ
>WENV181360908
OFNC01002294
[OFNC] sediment metagenome; Lake sediment
318
246
-
Gly
TCC
[ENA]
¢þ
>WENV183512192
OMKS01000110
[OMKS] sediment metagenome; hot spring sediment
47915
47985
+
Gly
TCC
[ENA]
¢þ
>WENV183513372
OMKS01004362
[OMKS] sediment metagenome; hot spring sediment
9778
9850
+
Gly
TCC
[ENA]
¢þ
>WENV183514298
OMKS01015540
[OMKS] sediment metagenome; hot spring sediment
3343
3273
-
Gly
TCC
[ENA]
¢þ
>At1268
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
2242351
2242421
+
Gly
TCC
[Ensembl]
¡û
>WENV170562474
CZCB01003035
[CZCB] anaerobic digester metagenome; anaerobic digester
1353
1423
+
Gly
TCC
[ENA]
¢þ
>WENV170562665
CZCB01004365
[CZCB] anaerobic digester metagenome; anaerobic digester
74284
74356
+
Gly
TCC
[ENA]
¢þ
>WENV170602332
FUWD010227295
[FUWD] metagenome; unknown
778
848
+
Gly
TCC
[ENA]
¢þ
>WENV170668856
LAHQ01068300
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
79
9
-
Gly
TCC
[ENA]
¢þ
>WENV170670757
LAHU01000467
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
20563
20635
+
Gly
TCC
[ENA]
¢þ
>WENV170671353
LAHU01041890
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
124
54
-
Gly
TCC
[ENA]
¢þ
>WENV170674723
LCWY01000999
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
2823
2750
-
Gly
TCC
[ENA]
¢þ
>WENV170675012
LCWZ01000706
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1297
1370
+
Gly
TCC
[ENA]
¢þ
>WENV170676994
LDZT01000090
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10252
10182
-
Gly
TCC
[ENA]
¢þ
>WENV170677275
LDZT01004659
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11810
11880
+
Gly
TCC
[ENA]
¢þ
>WENV170677582
LDZT01007061
[LDZT] terrestrial metagenome; oil reservoir sample SB1
72
2
-
Gly
TCC
[ENA]
¢þ
>WENV170678122
LDZT01011343
[LDZT] terrestrial metagenome; oil reservoir sample SB1
141
71
-
Gly
TCC
[ENA]
¢þ
>WENV170678691
LDZU01003835
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1893
1823
-
Gly
TCC
[ENA]
¢þ
>WENV170678701
LDZU01003943
[LDZU] terrestrial metagenome; oil reservoir sample SB2
11810
11880
+
Gly
TCC
[ENA]
¢þ
>WENV170678731
LDZU01004204
[LDZU] terrestrial metagenome; oil reservoir sample SB2
65945
66015
+
Gly
TCC
[ENA]
¢þ
>WENV170689470
LFRM01296106
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
168
98
-
Gly
TCC
[ENA]
¢þ
>WENV170715287
LNQE01001298
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3118
3188
+
Gly
TCC
[ENA]
¢þ
>WENV170719084
LSQX01102042
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2325
2255
-
Gly
TCC
[ENA]
¢þ
>WENV170721276
LSQX01184439
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3383
3313
-
Gly
TCC
[ENA]
¢þ
>WENV170721345
LSQX01186851
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
67
137
+
Gly
TCC
[ENA]
¢þ
>WENV170723033
LSQX01252654
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
914
988
+
Gly
TCC
[ENA]
¢þ
>WENV170969379
MTKW01027359
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
53
123
+
Gly
TCC
[ENA]
¢þ
>W1910211688
FMID01000044
Euryarchaeota
Methanoculleus chikugoensis [FMID]
53750
53820
+
Gly
TCC
[ENA]
¡û
>W1910226942
FNFT01000001
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
53386
53314
-
Gly
TCC
[ENA]
¡û
>W1910572544
JMIO01000139
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
736
664
-
Gly
TCC
[ENA]
¡û
>W1910573122
JOMF01000004
Euryarchaeota
Methanomicrobium mobile BP [JOMF]
276067
275996
-
Gly
TCC
[ENA]
¡û
>W1910583814
JXOJ01000002
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
559091
559163
+
Gly
TCC
[ENA]
¡û
>W1910617161
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
32887
32817
-
Gly
TCC
[ENA]
¡û
>W1910783547
MPOY01000605
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
2519
2589
+
Gly
TCC
[ENA]
¡û
>W1911581312
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
543917
543847
-
Gly
TCC
[ENA]
¡û
>SRA1031068
SRR035087.367820
454 Sequencing (SRP001808)
43
113
+
Gly
TCC
[SRA]
>SRA1032205
SRR035087.575377
454 Sequencing (SRP001808)
256
326
+
Gly
TCC
[SRA]
>SRA1032339
SRR035087.608601
454 Sequencing (SRP001808)
196
126
-
Gly
TCC
[SRA]
>SRA1035309
SRR035089.281882
454 Sequencing (SRP001810)
88
18
-
Gly
TCC
[SRA]
>W1610000243
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
622777
622849
+
Gly
TCC
[ENA]
¡û
>W1610000987
ABZB01000001
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
164816
164746
-
Gly
TCC
[ENA]
¡û
>W1610003499
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
964420
964490
+
Gly
TCC
[ENA]
¡û
>W1610045233
BBBH01000007
Euryarchaeota
Methanoculleus chikugoensis JCM 10825 [BBBH]
28791
28721
-
Gly
TCC
[ENA]
¡û
>W1610062996
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
399255
399183
-
Gly
TCC
[ENA]
¡û
>W1610063020
BCNX01000006
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
130954
130882
-
Gly
TCC
[ENA]
¡û
>W1610063076
BCNY01000015
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
189650
189722
+
Gly
TCC
[ENA]
¡û
>W1610605033
LFRN01000210
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
168
98
-
Gly
TCC
[ENA]
¡û
>W1610613687
LGGD01000237
Euryarchaeota
Methanoculleus marisnigri [LGGD]
141
71
-
Gly
TCC
[ENA]
¡û
>W1610613824
LGGJ01000099
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
72
2
-
Gly
TCC
[ENA]
¡û
>W1610614428
LGHE01000243
Euryarchaeota
Methanoculleus marisnigri [LGHE]
1893
1823
-
Gly
TCC
[ENA]
¡û
>W1610614437
LGHF01000002
Euryarchaeota
Methanomicrobiales archaeon 53_19 [LGHF]
65945
66015
+
Gly
TCC
[ENA]
¡û
>W1610685938
LKUD01000021
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
108
38
-
Gly
TCC
[ENA]
¡û
>W1610946086
LUYK01000229
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
1365
1435
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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