This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412121 (81 seq.)
>W1710786187
LJIS01000108
Actinomycetota
Rhodococcus sp. ADH [LJIS]
105741
105812
+
Cys
GCA
[ENA]
¡û
>W1710863271
LMEZ01000001
Actinomycetota
Mycobacterium sp. Root135 [LMEZ]
559369
559298
-
Cys
GCA
[ENA]
¡û
>W1710899275
LNIU01000029
Actinomycetota
Prescottella equi [LNIU]
52066
51995
-
Cys
GCA
[ENA]
¡û
>W1710909180
LNQH01000017
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
52343
52272
-
Cys
GCA
[ENA]
¡û
>W1710994915
LPZM01000078
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
32985
32914
-
Cys
GCA
[ENA]
¡û
>W131087782
AODN01000001
Actinomycetota
Rhodococcus qingshengii BKS 20-40 [AODN]
91547
91618
+
Cys
GCA
[ENA]
¡û
>W1711050245
LRRJ01000052
Actinomycetota
Rhodococcus qingshengii [LRRJ]
52224
52153
-
Cys
GCA
[ENA]
¡û
>W1711138362
LVCT01000339
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
8623
8552
-
Cys
GCA
[ENA]
¡û
>W1711168087
LVXC01000009
Actinomycetota
Rhodococcus qingshengii [LVXC]
55471
55400
-
Cys
GCA
[ENA]
¡û
>W1711179160
LWHK01000146
Actinomycetota
Rhodococcus sp. 1139 [LWHK]
56835
56906
+
Cys
GCA
[ENA]
¡û
>W1711252824
LYPG01000052
Actinomycetota
Rhodococcus erythropolis [LYPG]
111427
111498
+
Cys
GCA
[ENA]
¡û
>W1711261846
LYXB01000011
Actinomycetota
Rhodococcus qingshengii [LYXB]
57645
57574
-
Cys
GCA
[ENA]
¡û
>W1711351299
MDCH01000013
Actinomycetota
Rhodococcus erythropolis [MDCH]
52276
52205
-
Cys
GCA
[ENA]
¡û
>W1711475794
MJVD01000104
Actinomycetota
Rhodococcus erythropolis 1159 [MJVD]
166364
166435
+
Cys
GCA
[ENA]
¡û
>W1711518876
MLKO01000011
Actinomycetota
Rhodococcus erythropolis [MLKO]
57485
57414
-
Cys
GCA
[ENA]
¡û
>W1711577227
MNPP01000021
Actinomycetota
Rhodococcus sp. D-1 [MNPP]
52338
52267
-
Cys
GCA
[ENA]
¡û
>W1711666261
MRBQ01000016
Actinomycetota
Rhodococcus erythropolis [MRBQ]
52114
52043
-
Cys
GCA
[ENA]
¡û
>W1711705228
MSQF01000096
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
51901
51830
-
Cys
GCA
[ENA]
¡û
>W1711738421
MUBD01000018
Actinomycetota
Rhodococcus qingshengii [MUBD]
52533
52462
-
Cys
GCA
[ENA]
¡û
>W1711766922
MUZB01000014
Actinomycetota
Rhodococcus sp. 66b [MUZB]
118366
118437
+
Cys
GCA
[ENA]
¡û
>C171034425
CP014941
Actinomycetota
Rhodococcus sp. BH4 [CP014941]
4132123
4132052
-
Cys
GCA
-
¡û
>C171060532
CP017299
Actinomycetota
Rhodococcus sp. YL-1 [CP017299]
4118856
4118785
-
Cys
GCA
-
¡û
>WENV180100242
OAOL01003405
[OAOL] sediment metagenome; sediment
614
685
+
Cys
GCA
[ENA]
¢þ
>WENV180258099
OBEQ010972894
[OBEQ] groundwater metagenome; groundwater
1246
1317
+
Cys
GCA
[ENA]
¢þ
>WENV180354763
OBNE01018411
[OBNE] groundwater metagenome; groundwater
52144
52073
-
Cys
GCA
[ENA]
¢þ
>W141071743
ASJJ01000026
Actinomycetota
Rhodococcus rhodochrous ATCC 17895 [ASJJ]
121816
121887
+
Cys
GCA
[ENA]
¡û
>W141072047
ASKF01000007
Actinomycetota
Rhodococcus erythropolis R138 [ASKF]
57363
57292
-
Cys
GCA
[ENA]
¡û
>W141091877
AUZK01000027
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
52000
51929
-
Cys
GCA
[ENA]
¡û
>W141094460
AVCO01000044
Actinomycetota
Rhodococcus sp. P27 [AVCO]
50822
50751
-
Cys
GCA
[ENA]
¡û
>W141238639
BBLL01000009
Actinomycetota
Rhodococcus erythropolis [BBLL]
10635
10706
+
Cys
GCA
[ENA]
¡û
>C181089282
CP023720
Actinomycetota
Rhodococcus sp. H-CA8f [CP023720]
2192465
2192536
+
Cys
GCA
-
¡û
>C181124602
CP025959
Actinomycetota
Rhodococcus qingshengii djl-6-2 [CP025959]
4234214
4234143
-
Cys
GCA
-
¡û
>C191120356
CP034152
Actinomycetota
Rhodococcus sp. NJ-530 [CP034152]
4201713
4201642
-
Cys
GCA
-
¡û
>W141702567
JMLO01000021
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
84256
84329
+
Cys
GCA
[ENA]
¡û
>W141727259
JNCU01000020
Actinomycetota
Rhodococcus qingshengii [JNCU]
74218
74289
+
Cys
GCA
[ENA]
¡û
>W09132156
ACNO01000014
Actinomycetota
Rhodococcus erythropolis SK121 [ACNO]
85191
85262
+
Cys
GCA
[ENA]
¡û
>W141773450
JOIL01000024
Actinomycetota
Rhodococcus erythropolis [JOIL]
21820
21891
+
Cys
GCA
[ENA]
¡û
>W141773507
JOIM01000019
Actinomycetota
Rhodococcus opacus [JOIM]
51975
51904
-
Cys
GCA
[ENA]
¡û
>W1910128900
BHXB01000001
Actinomycetota
Rhodococcus erythropolis JCM 3201 [BHXB]
4127712
4127641
-
Cys
GCA
[ENA]
¡û
>C09108738
AP008957
Actinomycetota
Rhodococcus erythropolis PR4 [AP008957]
4333389
4333318
-
Cys
GCA
[Ensembl]
¡û
>C141001841
CP003761
Actinomycetota
Rhodococcus erythropolis CCM2595 [CP003761]
4030708
4030637
-
Cys
GCA
[Ensembl]
¡û
>W1910637693
LQWU01000017
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
52138
52067
-
Cys
GCA
[ENA]
¡û
>W1910910550
NHBD01000017
Actinomycetota
Rhodococcus erythropolis AV96 [NHBD]
52323
52252
-
Cys
GCA
[ENA]
¡û
>W1911136552
NOVD01000026
Actinomycetota
Rhodococcus qingshengii 23b-28 [NOVD]
2309
2238
-
Cys
GCA
[ENA]
¡û
>W1810582425
QEUH01000009
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
139498
139569
+
Cys
GCA
[ENA]
¡û
>W1810870028
QUAI01000001
Actinomycetota
Rhodococcus erythropolis ATCC 15903 [QUAI]
79091
79162
+
Cys
GCA
[ENA]
¡û
>C151079141
CP011295
Actinomycetota
Rhodococcus erythropolis BG43 [CP011295]
4060490
4060419
-
Cys
GCA
[Ensembl]
¡û
>W1510115775
CFHW01000012
Actinomycetota
Rhodococcus sp. 311R [CFHW]
44169
44240
+
Cys
GCA
[ENA]
¡û
>W1510649778
CVQP01000001
Actinomycetota
Rhodococcus sp. RD6.2 [CVQP]
929571
929644
+
Cys
GCA
[ENA]
¡û
>W1511480872
JWJL01000342
Actinomycetota
Rhodococcus erythropolis S-43 [JWJL]
753
682
-
Cys
GCA
[ENA]
¡û
>W1511639786
LDPN01000067
Actinomycetota
Rhodococcus erythropolis CAS922i [LDPN]
57610
57539
-
Cys
GCA
[ENA]
¡û
>W1511656584
LEKE01000058
Actinomycetota
Rhodococcus sp. ARP2 [LEKE]
52468
52397
-
Cys
GCA
[ENA]
¡û
>W11177990
AGCF01000002
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
2320597
2320526
-
Cys
GCA
[ENA]
¡û
>C161005703
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
2830833
2830904
+
Cys
GCA
[Ensembl]
¡û
>C161045400
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
6553247
6553176
-
Cys
GCA
[Ensembl]
¡û
>W1610045477
BBBO01000331
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
4819
4748
-
Cys
GCA
[ENA]
¡û
>W1610048788
BBEK01000025
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
52737
52808
+
Cys
GCA
[ENA]
¡û
>W1610050070
BBFM01000040
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
20017
20088
+
Cys
GCA
[ENA]
¡û
>W1610050448
BBFW01000032
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
29288
29217
-
Cys
GCA
[ENA]
¡û
>W1610068634
BCRM01000011
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
148869
148940
+
Cys
GCA
[ENA]
¡û
>W1610073947
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2000707
2000778
+
Cys
GCA
[ENA]
¡û
>W1610515533
FMBB01000015
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
52343
52272
-
Cys
GCA
[ENA]
¡û
>W1610649993
LJIS01000108
Actinomycetota
Rhodococcus sp. ADH [LJIS]
105741
105812
+
Cys
GCA
[ENA]
¡û
>W1610725617
LMEZ01000001
Actinomycetota
Mycobacterium sp. Root135 [LMEZ]
559369
559298
-
Cys
GCA
[ENA]
¡û
>W1610759679
LNIU01000029
Actinomycetota
Prescottella equi [LNIU]
52066
51995
-
Cys
GCA
[ENA]
¡û
>W1610767539
LNQH01000017
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
52343
52272
-
Cys
GCA
[ENA]
¡û
>W1610849572
LPZM01000078
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
32985
32914
-
Cys
GCA
[ENA]
¡û
>W1610891374
LRRJ01000052
Actinomycetota
Rhodococcus qingshengii [LRRJ]
52224
52153
-
Cys
GCA
[ENA]
¡û
>W1610949402
LVCT01000339
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
8623
8552
-
Cys
GCA
[ENA]
¡û
>W1610978094
LVXC01000009
Actinomycetota
Rhodococcus qingshengii [LVXC]
55471
55400
-
Cys
GCA
[ENA]
¡û
>W1611023821
LYXB01000011
Actinomycetota
Rhodococcus qingshengii [LYXB]
57645
57574
-
Cys
GCA
[ENA]
¡û
>W1710042318
BBBO01000331
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
4819
4748
-
Cys
GCA
[ENA]
¡û
>W1710045260
BBEK01000025
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
52737
52808
+
Cys
GCA
[ENA]
¡û
>W1710046469
BBFM01000040
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
20017
20088
+
Cys
GCA
[ENA]
¡û
>W1710046847
BBFW01000032
Actinomycetota
Rhodococcus qingshengii JCM 15477 [BBFW]
29288
29217
-
Cys
GCA
[ENA]
¡û
>W1710066007
BCRM01000011
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
148869
148940
+
Cys
GCA
[ENA]
¡û
>W1710071065
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2000707
2000778
+
Cys
GCA
[ENA]
¡û
>W1710072013
BCXA01000064
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
11793
11720
-
Cys
GCA
[ENA]
¡û
>W1710501223
FMBB01000015
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
52343
52272
-
Cys
GCA
[ENA]
¡û
>W1710507203
FMVB01000014
Actinomycetota
Rhodococcus erythropolis 164Chir2E [FMVB]
118024
118095
+
Cys
GCA
[ENA]
¡û
>W1710544515
FOAW01000008
Actinomycetota
Rhodococcus maanshanensis [FOAW]
11888
11815
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK