This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412181 (88 seq.)
>W1710867397
LMIG01000001
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
196116
196189
+
Gln
CTG
[ENA]
¡û
>W1710870175
LMKH01000034
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
358517
358590
+
Gln
CTG
[ENA]
¡û
>W1710870358
LMKL01000004
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
102607
102680
+
Gln
CTG
[ENA]
¡û
>W1710870448
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1502118
1502045
-
Gln
CTG
[ENA]
¡û
>W1710870752
LMKT01000023
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
4522
4449
-
Gln
CTG
[ENA]
¡û
>W1710870904
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
242396
242323
-
Gln
CTG
[ENA]
¡û
>W1710870962
LMKX01000010
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
68339
68266
-
Gln
CTG
[ENA]
¡û
>W1710871039
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
108149
108076
-
Gln
CTG
[ENA]
¡û
>W1710871202
LMLC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
545566
545493
-
Gln
CTG
[ENA]
¡û
>W1710871206
LMLD01000004
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
120284
120357
+
Gln
CTG
[ENA]
¡û
>W1710872299
LMLW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
588963
589036
+
Gln
CTG
[ENA]
¡û
>W1710876741
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
324485
324412
-
Gln
CTG
[ENA]
¡û
>W1710877228
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
337724
337797
+
Gln
CTG
[ENA]
¡û
>W1710912506
LNRR01000002
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
152214
152287
+
Gln
CTG
[ENA]
¡û
>W1710912567
LNRS01000004
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
152204
152277
+
Gln
CTG
[ENA]
¡û
>W1710912605
LNRT01000003
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
152283
152356
+
Gln
CTG
[ENA]
¡û
>W1710912650
LNRU01000004
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
152204
152277
+
Gln
CTG
[ENA]
¡û
>W1710912731
LNRW01000002
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
41931
42004
+
Gln
CTG
[ENA]
¡û
>W1710912851
LNRY01000023
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
21072
21145
+
Gln
CTG
[ENA]
¡û
>W1712105794
NISJ01000015
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
4815
4888
+
Gln
CTG
[ENA]
¡û
>W1712105836
NISK01000004
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
440068
439995
-
Gln
CTG
[ENA]
¡û
>WENV180105000
OAPD01001214
[OAPD] marine metagenome; 2010
1661
1734
+
Gln
CTG
[ENA]
¢þ
>WENV180107737
OAPH01004398
[OAPH] marine metagenome; seawater
128
55
-
Gln
CTG
[ENA]
¢þ
>WENV181379387
OFRD01001028
[OFRD] wastewater metagenome; Exp Tend CN 100WW
245
318
+
Gln
CTG
[ENA]
¢þ
>WENV181383684
OFRG01057797
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
497
424
-
Gln
CTG
[ENA]
¢þ
>WENV181385457
OFRI01091389
[OFRI] wastewater metagenome; Exp Tend VB 90WW
389
462
+
Gln
CTG
[ENA]
¢þ
>WENV181385924
OFRL01000124
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
33677
33604
-
Gln
CTG
[ENA]
¢þ
>ENV08000127
ABLW01118107
viral fraction from Gulf of Mexico
102
29
-
Gln
CTG
[ENA]
¡û
>WENV170578070
FSSH01009874
[FSSH] freshwater metagenome; drinking water
1887
1814
-
Gln
CTG
[ENA]
¢þ
>WENV170973843
MTKY01051316
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3072
2999
-
Gln
CTG
[ENA]
¢þ
>C181192074
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
320308
320235
-
Gln
CTG
-
¡û
>C191000363
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
3002198
3002125
-
Gln
CTG
-
¡û
>C191154765
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
3213263
3213190
-
Gln
CTG
-
¡û
>C191163780
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
441589
441516
-
Gln
CTG
-
¡û
>W141801027
JPDP01000203
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
3701
3628
-
Gln
CTG
[ENA]
¡û
>W141805166
JPJC01000068
Alphaproteobacteria
Sphingomonas sp. FUKUSWIS1 [JPJC]
16946
17019
+
Gln
CTG
[ENA]
¡û
>W1910744369
MIAL01000032
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
78456
78529
+
Gln
CTG
[ENA]
¡û
>W1810463401
PZZN01000001
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
1458428
1458501
+
Gln
CTG
[ENA]
¡û
>W1810475041
QAIS01000048
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
890
963
+
Gln
CTG
[ENA]
¡û
>W1810476717
QAOF01000005
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
163516
163589
+
Gln
CTG
[ENA]
¡û
>W1810476739
QAOG01000001
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
383742
383815
+
Gln
CTG
[ENA]
¡û
>W1810486888
QAYE01000004
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
359686
359759
+
Gln
CTG
[ENA]
¡û
>SRA1014140
SRR023845.15966
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
93
-
Gln
CTG
[SRA]
>SRA1014191
SRR023845.33627
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
146
73
-
Gln
CTG
[SRA]
>SRA1014242
SRR023845.51933
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
217
+
Gln
CTG
[SRA]
>SRA1014393
SRR023845.118644
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
109
182
+
Gln
CTG
[SRA]
>SRA1014679
SRR023845.259184
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
115
42
-
Gln
CTG
[SRA]
>SRA1014793
SRR023845.317203
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
146
73
-
Gln
CTG
[SRA]
>SRA1014813
SRR023845.323117
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
27
100
+
Gln
CTG
[SRA]
>SRA1014896
SRR023845.368548
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
115
42
-
Gln
CTG
[SRA]
>SRA1014938
SRR023845.390602
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
94
167
+
Gln
CTG
[SRA]
>SRA1014991
SRR023845.414397
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
112
39
-
Gln
CTG
[SRA]
>SRA1015400
SRR023846.44899
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
66
139
+
Gln
CTG
[SRA]
>SRA1015468
SRR023846.71578
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
127
200
+
Gln
CTG
[SRA]
>SRA1015511
SRR023846.89834
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
250
177
-
Gln
CTG
[SRA]
>SRA1015758
SRR023846.183816
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
225
152
-
Gln
CTG
[SRA]
>SRA1015873
SRR023846.236256
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
177
250
+
Gln
CTG
[SRA]
>SRA1016010
SRR023846.311520
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
102
175
+
Gln
CTG
[SRA]
>SRA1016191
SRR023846.392709
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
250
177
-
Gln
CTG
[SRA]
>C151044392
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3978899
3978826
-
Gln
CTG
[Ensembl]
¡û
>SRA1014763
SRR023845.303422
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
196
266
+
Gln
CTG
[SRA]
>W1510757045
JACU01000008
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
156725
156798
+
Gln
CTG
[ENA]
¡û
>W1511357047
JRVI01000024
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
8959
8886
-
Gln
CTG
[ENA]
¡û
>W1511361487
JSBN01000035
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
7867
7794
-
Gln
CTG
[ENA]
¡û
>W121031747
AHHA01000012
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
9180
9107
-
Gln
CTG
[ENA]
¡û
>W121033240
AHIR01000016
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
114923
114850
-
Gln
CTG
[ENA]
¡û
>W121033268
AHIS01000046
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
97126
97053
-
Gln
CTG
[ENA]
¡û
>W121046789
AIDW01000004
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
16002
16075
+
Gln
CTG
[ENA]
¡û
>W1610729743
LMIG01000001
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
196116
196189
+
Gln
CTG
[ENA]
¡û
>W1610732521
LMKH01000034
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
358517
358590
+
Gln
CTG
[ENA]
¡û
>W1610732704
LMKL01000004
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
102607
102680
+
Gln
CTG
[ENA]
¡û
>W1610732794
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
1502118
1502045
-
Gln
CTG
[ENA]
¡û
>W1610733098
LMKT01000023
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
4522
4449
-
Gln
CTG
[ENA]
¡û
>W1610733250
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
242396
242323
-
Gln
CTG
[ENA]
¡û
>W1610733308
LMKX01000010
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
68339
68266
-
Gln
CTG
[ENA]
¡û
>W1610733385
LMKZ01000001
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
108149
108076
-
Gln
CTG
[ENA]
¡û
>W1610733548
LMLC01000005
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
545566
545493
-
Gln
CTG
[ENA]
¡û
>W1610733552
LMLD01000004
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
120284
120357
+
Gln
CTG
[ENA]
¡û
>W1610734645
LMLW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
588963
589036
+
Gln
CTG
[ENA]
¡û
>W1610739087
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
324485
324412
-
Gln
CTG
[ENA]
¡û
>W1610739574
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
337724
337797
+
Gln
CTG
[ENA]
¡û
>W1610770865
LNRR01000002
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
152214
152287
+
Gln
CTG
[ENA]
¡û
>W1610770926
LNRS01000004
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
152204
152277
+
Gln
CTG
[ENA]
¡û
>W1610770964
LNRT01000003
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
152283
152356
+
Gln
CTG
[ENA]
¡û
>W1610771009
LNRU01000004
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
152204
152277
+
Gln
CTG
[ENA]
¡û
>W1610771090
LNRW01000002
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
41931
42004
+
Gln
CTG
[ENA]
¡û
>W1610771210
LNRY01000023
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
21072
21145
+
Gln
CTG
[ENA]
¡û
>W1710571523
FOVZ01000002
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
2937
2864
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK