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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.412400 (66 seq.)
>W1710777585
LJBS01000014
Bacillota
Pediococcus acidilactici [LJBS]
65616
65686
+
Gly
CCC
[ENA]
¡û
>W1710915778
LNUM01000009
Bacillota
Pediococcus acidilactici [LNUM]
11911
11981
+
Gly
CCC
[ENA]
¡û
>W1711005278
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
142031
141958
-
Gly
CCC
[ENA]
¡û
>W1711005569
LQNQ01000004
Bacillota
Pediococcus acidilactici [LQNQ]
210
140
-
Gly
CCC
[ENA]
¡û
>W1711005620
LQNR01000009
Bacillota
Pediococcus acidilactici [LQNR]
210
140
-
Gly
CCC
[ENA]
¡û
>W1711025261
LRBW01000005
Bacillota
Pediococcus acidilactici [LRBW]
206
136
-
Gly
CCC
[ENA]
¡û
>W1711068935
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
26694
26767
+
Gly
CCC
[ENA]
¡û
>W131146232
AQGT01000002
Bacillota
Pediococcus acidilactici D3 [AQGT]
173856
173786
-
Gly
CCC
[ENA]
¡û
>W1711258430
LYUJ01000021
Bacillota
Pediococcus acidilactici [LYUJ]
100813
100883
+
Gly
CCC
[ENA]
¡û
>W1711352471
MDDF01000028
Bacillota
Pediococcus acidilactici [MDDF]
168
98
-
Gly
CCC
[ENA]
¡û
>W131239174
BANK01000005
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
102260
102330
+
Gly
CCC
[ENA]
¡û
>W1711585767
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
869996
870066
+
Gly
CCC
[ENA]
¡û
>C171036828
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
131879
131809
-
Gly
CCC
-
¡û
>C171083309
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
840456
840386
-
Gly
CCC
-
¡û
>C171119616
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
735419
735349
-
Gly
CCC
-
¡û
>C171119672
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
735365
735295
-
Gly
CCC
-
¡û
>C171120476
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
735427
735357
-
Gly
CCC
-
¡û
>WENV180279712
OBHX01075009
[OBHX] metagenome; feces
300
370
+
Gly
CCC
[ENA]
¢þ
>WENV180333987
OBLF01003540
[OBLF] metagenome; feces
4342
4272
-
Gly
CCC
[ENA]
¢þ
>WENV180348905
OBLO01015436
[OBLO] metagenome; feces
1940
1870
-
Gly
CCC
[ENA]
¢þ
>W141241990
CAHU01000008
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
28374
28447
+
Gly
CCC
[ENA]
¡û
>W141280111
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
360245
360315
+
Gly
CCC
[ENA]
¡û
>WENV183238448
OLQY01061678
[OLQY] human gut metagenome; faeces
149
219
+
Gly
CCC
[ENA]
¢þ
>WENV183491465
OMGG01013021
[OMGG] human gut metagenome; human gut
339
269
-
Gly
CCC
[ENA]
¢þ
>WENV183762508
PPYE01276213
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
139
69
-
Gly
CCC
[ENA]
¢þ
>WENV183788974
PPYF01372305
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3215
3285
+
Gly
CCC
[ENA]
¢þ
>WENV183790290
PPYF01411172
[PPYF] human gut metagenome; stool from patient with Crohn's disease
62775
62845
+
Gly
CCC
[ENA]
¢þ
>WENV183792264
PPYF01458101
[PPYF] human gut metagenome; stool from patient with Crohn's disease
65624
65554
-
Gly
CCC
[ENA]
¢þ
>W141402953
JDVW01000006
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
102944
103017
+
Gly
CCC
[ENA]
¡û
>WENV170659269
JXWR01002501
[JXWR] soil metagenome; rice field; ambient CO2
12638
12565
-
Gly
CCC
[ENA]
¢þ
>C181042759
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
22234
22304
+
Gly
CCC
-
¡û
>C191023237
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
666899
666969
+
Gly
CCC
-
¡û
>C191035374
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
755289
755219
-
Gly
CCC
-
¡û
>C191106201
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1312242
1312312
+
Gly
CCC
-
¡û
>C191135612
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
691513
691443
-
Gly
CCC
-
¡û
>C191135670
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
808157
808087
-
Gly
CCC
-
¡û
>C191137803
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1181625
1181695
+
Gly
CCC
-
¡û
>W1910181658
BJMF01000002
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
108045
107975
-
Gly
CCC
[ENA]
¡û
>W1910373944
FUHV01000010
Bacillota
Pediococcus acidilactici S7 [FUHV]
559055
559125
+
Gly
CCC
[ENA]
¡û
>C141009497
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
715804
715877
+
Gly
CCC
[Ensembl]
¡û
>W1911696853
QNGC01000006
Bacillota
Pediococcus acidilactici GS1 [QNGC]
23424
23354
-
Gly
CCC
[ENA]
¡û
>W1911798481
QYRQ01000022
Bacillota
Pediococcus acidilactici WT [QYRQ]
176986
177056
+
Gly
CCC
[ENA]
¡û
>W1810049819
PCYQ01000001
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
408581
408651
+
Gly
CCC
[ENA]
¡û
>W10105135
ACXB01000009
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
59999
60069
+
Gly
CCC
[ENA]
¡û
>W10127358
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
133454
133384
-
Gly
CCC
[ENA]
¡û
>W11107455
ACXB01000009
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
59999
60069
+
Gly
CCC
[ENA]
¡û
>W11134846
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
133454
133384
-
Gly
CCC
[ENA]
¡û
>C161092359
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1295114
1295041
-
Gly
CCC
[Ensembl]
¡û
>W121011488
AGKB01000007
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
58753
58683
-
Gly
CCC
[ENA]
¡û
>W1610057785
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
28850
28923
+
Gly
CCC
[ENA]
¡û
>W1610527731
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
84026
83956
-
Gly
CCC
[ENA]
¡û
>W1610529219
JQBX01000004
Bacillota
Pediococcus stilesii [JQBX]
56228
56158
-
Gly
CCC
[ENA]
¡û
>W1610529452
JQCC01000001
Bacillota
Pediococcus acidilactici [JQCC]
445285
445355
+
Gly
CCC
[ENA]
¡û
>W1610641771
LJBS01000014
Bacillota
Pediococcus acidilactici [LJBS]
65616
65686
+
Gly
CCC
[ENA]
¡û
>W1610650087
LJIU01000003
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
27323
27396
+
Gly
CCC
[ENA]
¡û
>W1610774017
LNUM01000009
Bacillota
Pediococcus acidilactici [LNUM]
11911
11981
+
Gly
CCC
[ENA]
¡û
>W1610855928
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
142031
141958
-
Gly
CCC
[ENA]
¡û
>W1610856219
LQNQ01000004
Bacillota
Pediococcus acidilactici [LQNQ]
210
140
-
Gly
CCC
[ENA]
¡û
>W1610856270
LQNR01000009
Bacillota
Pediococcus acidilactici [LQNR]
210
140
-
Gly
CCC
[ENA]
¡û
>W1610873373
LRBW01000005
Bacillota
Pediococcus acidilactici [LRBW]
206
136
-
Gly
CCC
[ENA]
¡û
>W1610909505
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
26694
26767
+
Gly
CCC
[ENA]
¡û
>W1611020902
LYUJ01000021
Bacillota
Pediococcus acidilactici [LYUJ]
100813
100883
+
Gly
CCC
[ENA]
¡û
>W1710054484
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
28850
28923
+
Gly
CCC
[ENA]
¡û
>W1710629362
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
84026
83956
-
Gly
CCC
[ENA]
¡û
>W1710630809
JQBX01000004
Bacillota
Pediococcus stilesii [JQBX]
56228
56158
-
Gly
CCC
[ENA]
¡û
>W1710631042
JQCC01000001
Bacillota
Pediococcus acidilactici [JQCC]
445285
445355
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK